totajuliusd / topr
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.
☆49Updated last month
Related projects ⓘ
Alternatives and complementary repositories for topr
- ☆33Updated 3 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Regional association plots☆25Updated 7 months ago
- Colocalization analysis of genetic association signals☆47Updated this week
- Hypothesis Prioritisation in multi-trait Colocalization☆47Updated 7 months ago
- LDlinkR☆56Updated 7 months ago
- GWAS for survival analysis in large cohorts☆19Updated 3 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated 10 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆40Updated 6 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆40Updated 3 years ago
- Partners Biobank genomics data QC☆25Updated 4 years ago
- GWAS Summary Statistics Data Harmonisation☆20Updated 2 weeks ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆47Updated last month
- QTL Discovery using Annotations☆23Updated last year
- Harmonise GWAS summary statistics against a reference VCF☆40Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆26Updated 6 months ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆17Updated 2 years ago
- Make LocusZoom-like plots with your own LD matrix.☆38Updated 2 years ago
- Statistical tools for Quantitative Genetic Analyses☆34Updated this week
- ☆32Updated last year
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆33Updated 2 weeks ago
- Regional association plots☆25Updated 7 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆24Updated 6 months ago
- Reading, querying and writing GWAS summary data in VCF format☆68Updated 6 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆27Updated 5 months ago
- ☆18Updated 6 years ago
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆92Updated 11 months ago
- ☆16Updated 3 years ago