CalabreseLab / seekrLinks
A library for counting small kmer frequencies in nucleotide sequences.
☆28Updated last year
Alternatives and similar repositories for seekr
Users that are interested in seekr are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 9 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- A software for calculating telomere length☆72Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 2 months ago
- Master of Pores 2☆23Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ☆37Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 9 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- Evolutionary Transcriptomics with R☆49Updated last month
- ☆38Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- gatk4 RNA variant calling pipeline☆56Updated this week
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆51Updated 7 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 11 months ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated 2 weeks ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- ☆45Updated 8 years ago