A place to collect papers that are related to deep learning and computational biology
☆189Feb 13, 2016Updated 10 years ago
Alternatives and similar repositories for deep_learning_papers
Users that are interested in deep_learning_papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,280Dec 25, 2022Updated 3 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- home of the bear's lair☆10May 19, 2017Updated 9 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆1,988Nov 7, 2021Updated 4 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆35May 20, 2026Updated 2 months ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆268Sep 14, 2020Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- ☆22Jul 4, 2017Updated 9 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- A list of deep learning implementations in biology☆2,155Aug 3, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Aug 30, 2025Updated 11 months ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 8 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 9 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆154May 31, 2026Updated 2 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆111Dec 16, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆37Jun 19, 2026Updated last month
- Response to blog post about Salmon☆37Sep 3, 2017Updated 8 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 3 months ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Javascript library for visualizing genomics data with D3.☆19Jan 6, 2017Updated 9 years ago
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Nov 22, 2022Updated 3 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago