google / nucleusLinks
Python and C++ code for reading and writing genomics data.
☆792Updated 3 years ago
Alternatives and similar repositories for nucleus
Users that are interested in nucleus are comparing it to the libraries listed below
Sorting:
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆396Updated last year
- SDK for GPU accelerated genome assembly and analysis☆293Updated last year
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆261Updated last year
- a framework for training sequence-level deep learning networks☆385Updated 7 months ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆260Updated 4 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆238Updated 5 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,008Updated 10 months ago
- Haplotype VCF comparison tools☆437Updated last year
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆836Updated last month
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆682Updated this week
- bedtools - the swiss army knife for genome arithmetic☆985Updated 4 months ago
- Kipoi's model zoo API☆237Updated last year
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,450Updated 2 months ago
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆951Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆686Updated this week
- A list of useful bioinformatics resources☆606Updated 2 months ago
- Bioinformatics containers☆731Updated 2 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆441Updated 2 months ago
- Code and examples for JHU Computational Genomics class☆302Updated 8 months ago
- Tools to process and analyze deep sequencing data.☆723Updated last week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆834Updated last month
- Cloud-native genomic dataframes and batch computing☆1,017Updated this week
- Applied Computational Genomics Course at UU: Spring 2020☆982Updated last year
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆495Updated this week
- A curated list of nextflow based pipelines☆598Updated 3 weeks ago
- Efficient pythonic random access to fasta subsequences☆476Updated last month
- Python library to handle Gene Ontology (GO) terms☆842Updated last month
- Python library to plot DNA sequence features (e.g. from Genbank files)☆639Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆826Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,021Updated 11 months ago