4ment / torchtreeLinks
A probabilistic framework in PyTorch for phylogenetic models
☆17Updated this week
Alternatives and similar repositories for torchtree
Users that are interested in torchtree are comparing it to the libraries listed below
Sorting:
- Phylogenetic inference using Stan☆23Updated 6 months ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆39Updated last year
- ☆13Updated 10 months ago
- [mu]tation [s]pectrum [h]istory [i]nference☆26Updated 8 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- genotype dimensionality reduction with a VAE☆46Updated 6 months ago
- Tools for describing and manipulating demographic models.☆19Updated 4 months ago
- ☆12Updated 6 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Updated 7 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last week
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- Estimating time trees from very large phylogenies☆27Updated last year
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Updated 4 months ago
- Forward-time simulation in Python using fwdpp☆31Updated 2 weeks ago
- Calculate distances between phylogenetic trees in R☆33Updated this week
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 3 years ago
- ☆18Updated last month
- ☆19Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆35Updated 3 months ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Updated 2 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Software for linkage disequilibrium graphical models☆16Updated 5 months ago
- A Python library for interacting with ENA's API☆23Updated 4 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 8 months ago
- Estimate linkage disequilibrium between unphased loci☆11Updated 10 years ago
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Pathogen evolution, selection and immunity☆45Updated last year
- Multinomial Logistic-Normal Models (really fast)☆20Updated 6 months ago