Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework" (Dellicour et al. 2020, Nature Commun.)
☆13Oct 27, 2024Updated 2 years ago
Alternatives and similar repositories for wnv_north_america
Users that are interested in wnv_north_america are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Dec 20, 2022Updated 3 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆46Sep 4, 2026Updated 2 months ago
- Probabilistic programming & automatic differentiation for phylogenetics☆13Aug 4, 2026Updated 3 months ago
- Dengue antigenic variation and evolutionary dynamics☆12Jan 7, 2022Updated 4 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 4 months ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Tutorial on Bayesian phylogenetic analysis☆54Sep 21, 2017Updated 9 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆23Jul 24, 2019Updated 7 years ago
- Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution☆12Mar 20, 2024Updated 2 years ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 7 months ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Oct 13, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python-interface C++ library for Bayesian phylogenetics via optimization☆42Apr 8, 2024Updated 2 years ago
- ☆13Oct 26, 2026Updated 2 weeks ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆34Oct 25, 2013Updated 13 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- flu utilities☆12Feb 1, 2023Updated 3 years ago
- Nested sampling packagin for BEAST☆12Aug 12, 2026Updated 2 months ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆20Jun 26, 2022Updated 4 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topo…☆14Oct 17, 2026Updated 3 weeks ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Inference framework for serological data☆20Sep 24, 2026Updated last month
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 8 months ago
- Bayesian Evolutionary Analysis Sampling Trees☆249Updated this week
- ☆51Mar 11, 2022Updated 4 years ago
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆23Oct 20, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Alignment editor for Mac OS X☆30Aug 1, 2017Updated 9 years ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆23Oct 23, 2026Updated 2 weeks ago
- Multi-type birth-death-sampling modelling for BEAST 2.☆11Oct 23, 2026Updated 2 weeks ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 4 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆15Dec 8, 2025Updated 11 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆42Updated this week
Are these results useful?