Hamiltonian Monte Carlo on the space of phylogenies
☆10Apr 20, 2017Updated 9 years ago
Alternatives and similar repositories for phyloHMC
Users that are interested in phyloHMC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- ☆13Aug 4, 2026Updated 2 months ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Oct 11, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- Code for learnable topological features for phylogenetic inference via graph neural networks☆11Mar 3, 2023Updated 3 years ago
- Bacterial phylogenetics in BEAST 2.☆20Sep 17, 2026Updated last month
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 5 months ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 6 months ago
- Make and use nested directory trees corresponding to combinatorial choices of parameters☆20Apr 23, 2017Updated 9 years ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- R We There Yet?☆33Mar 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of l…☆12Oct 26, 2025Updated 11 months ago
- ☆12Feb 24, 2026Updated 7 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- ☆11Dec 20, 2022Updated 3 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 11 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆14Sep 26, 2017Updated 9 years ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆17Jun 21, 2024Updated 2 years ago
- ☆12May 12, 2019Updated 7 years ago
- Rust wrapper of the BWA C API☆20May 23, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bio++ Program Suite☆18Oct 7, 2026Updated last week
- PhyDyn: Epidemiological modelling in BEAST☆21Sep 7, 2026Updated last month
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated this week
- Dengue antigenic variation and evolutionary dynamics☆12Jan 7, 2022Updated 4 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 6 years ago
- Bio++ Core Library☆12Jul 7, 2026Updated 3 months ago
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- Posterior summarisation in Bayesian phylogenetics☆77Sep 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆61Nov 14, 2018Updated 7 years ago
- ☆20Jun 15, 2024Updated 2 years ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jul 2, 2026Updated 3 months ago
- An exocortex☆12Jan 7, 2018Updated 8 years ago
- Compiles wisp expressions to Javascript in your Clojure project☆12Dec 30, 2018Updated 7 years ago
- ☆68Oct 17, 2023Updated 3 years ago
- ☆10Jun 13, 2024Updated 2 years ago