thednainus / Bayesian_tutorial
Tutorial on Bayesian phylogenetic analysis
☆46Updated 7 years ago
Alternatives and similar repositories for Bayesian_tutorial:
Users that are interested in Bayesian_tutorial are comparing it to the libraries listed below
- R We There Yet?☆30Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated 11 months ago
- PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.☆23Updated 5 months ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆28Updated 3 weeks ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- ☆20Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated last month
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆33Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆55Updated 6 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- R package for microbial pangenomics☆23Updated 2 years ago
- Automatic Assembly For The Fungi☆19Updated 2 months ago
- ☆67Updated 8 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆32Updated 2 months ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last week
- Genome wide orthology inference and dNdS estimation☆90Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A program for multimodel inference on speciation and trait evolution☆33Updated 7 years ago
- ☆19Updated 9 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Python version of PHLAWD☆21Updated 4 months ago
- Rarefaction scripts☆17Updated last year
- Inferring global and local strict molecular clocks using root-to-tip regression☆11Updated 8 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated last week
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated 11 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- diversity estimation under ecological networks☆83Updated last year
- ☆12Updated 5 years ago