Connecting research programs and the outside world
☆29Aug 7, 2026Updated this week
Alternatives and similar repositories for bipartite
Users that are interested in bipartite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- Phylogenetic model exploration with deep learning☆12Jun 15, 2026Updated last month
- Python Modeling Interface☆14Updated this week
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 6 months ago
- A Julia package for random variables, some transformations and probabilities☆22Jan 2, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Library for calculating exact ligand cone angles☆14Aug 21, 2022Updated 3 years ago
- ☆14Jul 24, 2023Updated 3 years ago
- A program to automatically generate volcano plots for catalysis.☆15Dec 6, 2024Updated last year
- Opinionated viral metagenomics workflow☆16Updated this week
- Viral (meta)-genome assembly pipeline.☆23Jul 22, 2026Updated 2 weeks ago
- Agents for Claude Code☆23May 6, 2026Updated 3 months ago
- ☆21Jul 2, 2026Updated last month
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- ☆15Jul 24, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆35Updated this week
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆32Aug 3, 2026Updated last week
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆29Jul 31, 2026Updated last week
- ☆28Updated this week
- ☆10Feb 9, 2026Updated 6 months ago
- ☆18Jun 11, 2024Updated 2 years ago
- ☆10Jun 13, 2026Updated last month
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆41Apr 6, 2026Updated 4 months ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆20Jan 13, 2026Updated 6 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jun 9, 2026Updated 2 months ago
- Phage Annotation using Protein Structures☆170Jul 20, 2026Updated 3 weeks ago
- Machine learning exercises for the MolSim course (http://www.acmm.nl/molsim/molsim2023/index.html)☆29Jan 16, 2024Updated 2 years ago
- Swirl.jl is an interactive learning platform for Julia that runs entirely in the console/terminal, inspired by the popular swirl package …☆29Nov 22, 2025Updated 8 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 3 months ago
- ☆24Feb 2, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- R package to reconstruct ancestral networks inferred with RevBayes☆13Apr 20, 2026Updated 3 months ago
- Tidier text analysis in Julia, modeled after the tidytext R package.☆19Mar 25, 2025Updated last year
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆25Jul 6, 2026Updated last month
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago