philippmuench / dna_lstm
LSTM for binary DNA sequence classification
☆30Updated 2 years ago
Alternatives and similar repositories for dna_lstm:
Users that are interested in dna_lstm are comparing it to the libraries listed below
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Updated 6 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆23Updated 5 years ago
- Recreation of the DNA Sequence Classification Paper☆13Updated 8 years ago
- A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations☆20Updated 2 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 4 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- CNN based classifier for detecting viral sequences among metagenomic contigs☆33Updated 4 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Deep learning methods for feature selection in gene expression autism data.☆36Updated 2 years ago
- Final project for CS224d☆9Updated 7 years ago
- Predicting Future Influenza Virus Sequences with Machine Learning☆33Updated 7 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated 11 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Deep learning multi-label classifier of non-coding DNA sequences☆12Updated 5 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 7 months ago
- Repository for the T2D/obesity experiments run in the Metapheno paper☆14Updated 6 years ago
- Lists open source machine learning projects solving genomic or molecular biology problems.☆29Updated 7 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- Training and testing of DeepSEA models.☆14Updated 9 years ago
- Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals☆19Updated 6 years ago
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆25Updated 2 years ago
- ☆12Updated 4 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics☆22Updated 8 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago