LSTM for binary DNA sequence classification
☆30Jun 21, 2022Updated 3 years ago
Alternatives and similar repositories for dna_lstm
Users that are interested in dna_lstm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Apr 16, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- Making Metagenomes Manageable☆12Apr 4, 2017Updated 9 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- noting something maybe useful in the future.☆10Jul 12, 2020Updated 5 years ago
- classifying human DNA sequence and random ATCG sequences, using keras CNN☆23Jul 8, 2017Updated 8 years ago
- All the fun and adventure of MHC naming, now in Python☆10Apr 5, 2026Updated 2 weeks ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- A scraper for bioRxiv☆12Apr 12, 2023Updated 3 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- ☆12Aug 28, 2015Updated 10 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆25Jan 23, 2020Updated 6 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated last year
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- [ICIP 2024]Rethinking temporal self-similarity for repetitive action counting☆10Mar 10, 2025Updated last year
- ☆30Nov 11, 2016Updated 9 years ago
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 5 months ago
- Interpreting Deep Neural Networks with PyTorch☆15Oct 20, 2020Updated 5 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆22Dec 6, 2018Updated 7 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Dirichlet Process Mixture Models in Julia☆14May 31, 2016Updated 9 years ago
- geneSurv: an interactive web-based tool for survival analysis in genomics research☆17Mar 17, 2020Updated 6 years ago
- Multifractal analysis in Matlab and Python☆10Mar 25, 2020Updated 6 years ago
- UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)☆16May 10, 2017Updated 8 years ago
- Recursive Neural Networks implemented with Tensorflow☆13Nov 5, 2019Updated 6 years ago
- Various automated MATLAB pipelines for preprocessing EEG☆13Feb 25, 2020Updated 6 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆74Apr 1, 2026Updated 2 weeks ago