Geometric deep learning method to predict protein binding interfaces from a protein structure.
☆173Oct 11, 2023Updated 2 years ago
Alternatives and similar repositories for PeSTo
Users that are interested in PeSTo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆50Nov 4, 2025Updated 10 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆143Jan 28, 2026Updated 8 months ago
- ☆147Jun 18, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Public RFDiffusionAA repo☆489Jul 9, 2024Updated 2 years ago
- Template-based protein design with Raygun☆157Sep 23, 2026Updated last week
- ☆824May 18, 2026Updated 4 months ago
- ☆93Sep 25, 2024Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated 2 years ago
- Protein-ligand structure prediction☆241Jul 31, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆274Sep 9, 2026Updated 3 weeks ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆779Jun 19, 2024Updated 2 years ago
- ☆419Aug 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year
- ☆259Sep 22, 2026Updated last week
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆137Oct 30, 2025Updated 11 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆134Oct 24, 2025Updated 11 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 5 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆93Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆214Apr 21, 2025Updated last year
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- ☆220Sep 24, 2024Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆945Aug 28, 2026Updated last month
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆192Oct 7, 2025Updated 11 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆147Feb 1, 2026Updated 7 months ago
- ☆10Mar 8, 2024Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆425Jul 3, 2023Updated 3 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Sep 18, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆336Oct 6, 2025Updated 11 months ago
- Official repo of the modular BioExcel version of HADDOCK☆277Updated this week
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆197Sep 7, 2026Updated 3 weeks ago
- A generative model for programmable protein design☆834Apr 11, 2024Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆100Jun 11, 2025Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago