Alternatives and similar repositories for mergelanes

Users that are interested in mergelanes are comparing it to the libraries listed below

• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 4 months ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆34Updated 2 weeks ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆50Updated 2 weeks ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated last month
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆40Updated last year
• Xinglab / rMATS-long
  ☆33Updated 10 months ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆36Updated 2 years ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated last year
• js2264 / tidyCoverage
  ☆22Updated last week
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆34Updated 7 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 6 years ago
• 123xiaochen / VCFshiny
  ☆29Updated last year
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆36Updated 4 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated last month
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆54Updated last week
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 4 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 3 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆22Updated 5 years ago
• nghiavtr / FuSeq
  ☆33Updated 3 years ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆50Updated 4 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆62Updated 3 weeks ago