openproblems-bio / neurips-2023-scriptsLinks
Scripts associated with the 2023 Open Problems competition
☆11Updated 2 years ago
Alternatives and similar repositories for neurips-2023-scripts
Users that are interested in neurips-2023-scripts are comparing it to the libraries listed below
Sorting:
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- Models and datasets for perturbational single-cell omics☆171Updated 3 years ago
- Comprehensive suite for evaluating perturbation prediction models☆122Updated 3 weeks ago
- ☆33Updated 5 years ago
- ☆70Updated 6 months ago
- ☆38Updated last month
- Diffusion model for gene regulatory network inference.☆26Updated last week
- Vector representations of gene co-expression in single cell RNAseq.☆36Updated 3 months ago
- ☆100Updated 3 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆35Updated 6 months ago
- ☆90Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Updated 5 months ago
- ☆155Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 4 months ago
- pytorch dataloaders for single-cell perturbation data☆42Updated this week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59Updated 3 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Updated last week
- repository containing analysis scripts and auxiliary files☆37Updated 5 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆143Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆92Updated 2 months ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated last year
- ☆52Updated 3 weeks ago
- CZ CELLxGENE Discover Census☆117Updated 3 weeks ago
- ☆79Updated last month
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Updated 3 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 4 years ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago