Alternatives and similar repositories for scgen-reproducibility:

Users that are interested in scgen-reproducibility are comparing it to the libraries listed below

• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆33Updated 4 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆40Updated last year
• lanagarmire / Asgard
  ☆41Updated last year
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆78Updated 2 years ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆102Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 10 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆52Updated 7 months ago
• SchubertLab / mvTCR
  ☆51Updated 4 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated last week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆29Updated 4 years ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆43Updated last year
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 3 months ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 5 years ago
• theislab / tcellmatch
  ☆38Updated 4 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆58Updated 7 months ago
• lilab-bcb / harmony-pytorch
  ☆51Updated this week
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆76Updated 3 months ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆46Updated 2 years ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆12Updated last month
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆41Updated last year
• theislab / scTab
  ☆57Updated 6 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 4 months ago