theislab / scgen-reproducibilityView external linksLinks
☆33Oct 4, 2020Updated 5 years ago
Alternatives and similar repositories for scgen-reproducibility
Users that are interested in scgen-reproducibility are comparing it to the libraries listed below
Sorting:
- Single cell perturbation prediction☆334Dec 5, 2024Updated last year
- Conditional out-of-distribution prediction☆62Aug 2, 2024Updated last year
- Reproducing result from the paper☆34May 12, 2021Updated 4 years ago
- ☆14Jan 21, 2021Updated 5 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆157Oct 31, 2024Updated last year
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- ☆13Jun 4, 2023Updated 2 years ago
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆59Jul 22, 2024Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆145Feb 6, 2025Updated last year
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Jul 23, 2020Updated 5 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Dec 10, 2019Updated 6 years ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆20Jan 31, 2026Updated 2 weeks ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Jun 14, 2022Updated 3 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆332Feb 1, 2025Updated last year
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- ☆20Nov 15, 2020Updated 5 years ago
- Reference mapping for single-cell genomics☆398Dec 2, 2025Updated 2 months ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- ☆21Aug 30, 2018Updated 7 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- ☆23Oct 6, 2025Updated 4 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆184Sep 7, 2023Updated 2 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Jan 17, 2023Updated 3 years ago
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆88May 27, 2024Updated last year
- Rphenograph: R implementation of the PhenoGraph algorithm☆52Jun 8, 2020Updated 5 years ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆205Updated this week
- Deep count autoencoder for denoising scRNA-seq data☆268Mar 21, 2024Updated last year
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆37Jan 30, 2026Updated 2 weeks ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Aug 9, 2017Updated 8 years ago
- ☆25Oct 14, 2024Updated last year
- ☆20Mar 16, 2019Updated 6 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆52Mar 27, 2021Updated 4 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Mar 2, 2020Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago