Alternatives and similar repositories for RegDiffusion

Users that are interested in RegDiffusion are comparing it to the libraries listed below

• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆74Updated this week
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆106Updated 11 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 2 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆23Updated 2 weeks ago
• HantaoShu / DeepSEM
  ☆83Updated 2 years ago
• altoslabs / perturbench
  ☆32Updated 2 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆35Updated 5 years ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated this week
• czi-ai / scGenePT
  ☆20Updated 6 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆34Updated 3 weeks ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• theislab / scgen-reproducibility
  ☆29Updated 4 years ago
• theislab / prophet
  ☆35Updated 2 months ago
• theislab / scTab
  ☆59Updated 10 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆129Updated 5 months ago
• yulun-rayn / graphVCI
  Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)
  ☆19Updated last month
• vandijklab / CINEMA-OT
  ☆32Updated 3 months ago
• Genentech / sVAE
  ☆63Updated 2 years ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆15Updated 9 months ago
• BaiDing1234 / AttentionPert
  ☆13Updated last year
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆96Updated this week
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆65Updated last week
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆17Updated last month
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 9 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆71Updated last month
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆42Updated last week
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 4 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆44Updated 8 months ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 10 months ago