TuftsBCB / RegDiffusionLinks
Diffusion model for gene regulatory network inference.
☆26Updated last week
Alternatives and similar repositories for RegDiffusion
Users that are interested in RegDiffusion are comparing it to the libraries listed below
Sorting:
- ☆70Updated 6 months ago
- pytorch dataloaders for single-cell perturbation data☆42Updated this week
- ☆38Updated last month
- repository containing analysis scripts and auxiliary files☆37Updated 5 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- ☆36Updated 9 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Updated last year
- ☆66Updated 2 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆35Updated 6 months ago
- ☆14Updated last year
- ☆62Updated last year
- ☆74Updated last week
- Modeling complex perturbations with CellFlow☆118Updated this week
- Comprehensive suite for evaluating perturbation prediction models☆122Updated 3 weeks ago
- ☆90Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 4 years ago
- ☆100Updated 3 months ago
- ☆90Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 2 weeks ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- ☆17Updated 8 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Updated this week
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Updated 7 months ago
- Functional and Learnable Cell dynamicS☆21Updated 8 months ago
- Code and example of the D-SPIN framework☆24Updated 3 weeks ago
- ☆15Updated 3 years ago
- ☆52Updated 3 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Updated last year