welch-lab / PerturbNetLinks
PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
☆49Updated 3 months ago
Alternatives and similar repositories for PerturbNet
Users that are interested in PerturbNet are comparing it to the libraries listed below
Sorting:
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆115Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆127Updated 8 months ago
- Modeling complex perturbations with CellFlow☆89Updated last week
- Models and datasets for perturbational single-cell omics☆165Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- ☆56Updated 3 months ago
- ☆85Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago
- ☆35Updated last month
- ☆30Updated 5 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated last year
- ☆43Updated last week
- A model developed for the generation of scRNA-seq data☆73Updated 8 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆27Updated 2 months ago
- Comprehensive suite for evaluating perturbation prediction models☆94Updated last week
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆86Updated 3 years ago
- ☆18Updated 4 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated last month
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆62Updated 10 months ago
- ☆14Updated 7 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 8 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- ☆85Updated last year
- ☆141Updated last year
- ☆38Updated 3 months ago
- ☆22Updated last year
- ☆11Updated 5 months ago
- Diffusion model for gene regulatory network inference.☆24Updated 3 months ago