Alternatives and similar repositories for PerturbNet:

Users that are interested in PerturbNet are comparing it to the libraries listed below

• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆99Updated 8 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆68Updated 3 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 3 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆154Updated 2 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆90Updated last month
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago
• theislab / scgen-reproducibility
  ☆26Updated 4 years ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆112Updated 3 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆46Updated 4 months ago
• yulun-rayn / graphVCI
  This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…
  ☆17Updated 2 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆124Updated 2 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆34Updated 5 years ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆59Updated 2 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆54Updated last month
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆60Updated 6 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆63Updated 11 months ago
• melobio / Concerto-reproducibility
  ☆38Updated 2 years ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆23Updated last month
• HantaoShu / DeepSEM
  ☆79Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆61Updated 2 years ago
• theislab / prophet
  ☆30Updated this week
• theislab / scTab
  ☆58Updated 7 months ago
• TencentAILabHealthcare / scTranslator
  ☆36Updated 9 months ago
• altoslabs / perturbench
  ☆25Updated 3 months ago
• lanagarmire / Asgard
  ☆42Updated last year
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆41Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 6 months ago
• theislab / multicpa
  ☆14Updated 2 years ago