Alternatives and similar repositories for ML_Semantic_Segmenation_NMI:

Users that are interested in ML_Semantic_Segmenation_NMI are comparing it to the libraries listed below

• BrancoLab / imgreg2D
  2D image registration in python, using napari.
  ☆16Updated 3 years ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆28Updated 2 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆66Updated 2 years ago
• mhaft / DeepVess
  ☆29Updated 9 months ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆65Updated 3 years ago
• embl-cba / elastixWrapper
  ☆13Updated 2 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated 9 months ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 3 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆51Updated last year
• BigNeuron / Data
  ☆16Updated 8 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆45Updated this week
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆53Updated this week
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 6 months ago
• neurodata / ndreg
  Perform image registration of 2D and 3D volumes using state-of-the-art deformable registration.
  ☆23Updated 5 years ago
• dtward / image-registration-summer-school-2018
  Python notebooks and data for learning about image registration. Hosted at a summer school
  ☆9Updated 6 years ago
• juglab / DecoNoising
  ☆10Updated 4 years ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆61Updated 5 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆49Updated 2 weeks ago
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆108Updated 8 months ago
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 6 years ago
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 5 months ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆12Updated 3 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• argunsah / SpineS
  Dendritic Spine Analysis Software
  ☆13Updated last year
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆40Updated 6 months ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆43Updated 7 months ago