A toolbox for working with Allen Human Brain Atlas microarray expression data
☆14Jan 12, 2025Updated last year
Alternatives and similar repositories for abagen
Users that are interested in abagen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆51Nov 23, 2021Updated 4 years ago
- Maps gene samples into surface parcellation☆19Dec 20, 2017Updated 8 years ago
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆113Sep 3, 2024Updated last year
- Brain Analysis using Graph Theory☆12Jul 5, 2019Updated 6 years ago
- Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disor…☆25Sep 22, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in…☆58Aug 25, 2020Updated 5 years ago
- Segmentation tool for the delineation and volumetric quantification of the choroid plexus☆23Jun 2, 2025Updated 9 months ago
- Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.☆52Jun 29, 2023Updated 2 years ago
- Visualize and print volumetric brain data☆13Jun 20, 2024Updated last year
- Project your functional brain signal onto the white matter, and explore the pathways supporting brain functions.☆36Jun 5, 2024Updated last year
- Morphometric similarity in psychosis- data and code☆54May 8, 2019Updated 6 years ago
- A package, and script, to perform imaging transcriptomics on a neuroimaging scan.☆28Updated this week
- A radiomics tool with a variety of brain MRI processing functions, including affine registration, hippocampus segmentation and feature ca…☆29Jul 20, 2021Updated 4 years ago
- The Vini in silico model of cancer☆12Mar 7, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆33Sep 7, 2018Updated 7 years ago
- Fragments FreeSurfer parcellation annotation in N-equal sized parcels☆29Aug 13, 2020Updated 5 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- PNH segmentation pipelines based on nipype☆24Updated this week
- data4PCCAR: A R-collection of data sets and tools to illustrate Abdi & Beaton (2021) Principal Component and Correspondence Analyses with…☆13Jan 19, 2026Updated 2 months ago
- A package, and script, to perform imaging transcriptomics on a neuroimaging scan.☆15Jul 1, 2024Updated last year
- Single Shell Free Water Elimination Model for Diffusion Tensor Imaging☆32Jan 18, 2024Updated 2 years ago
- Standard human cortical surface-based template for neuroimaging analyses (Freesurfer, left-right-symmetric, ~32k vertices) v☆54Sep 26, 2023Updated 2 years ago
- precon_all surface pipline☆29Dec 19, 2025Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Data and code supporting Hansen et al., 2022 Nature Neuroscience "Mapping neurotransmitter systems to the structural and functional organ…☆122Oct 27, 2022Updated 3 years ago
- Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity☆57Jun 17, 2024Updated last year
- Optimization process of WGCNA hierarchical clustering with k-means☆15Mar 14, 2019Updated 7 years ago
- Create QC and summary reports for Alevin output☆31Jan 27, 2026Updated 2 months ago
- myPLS toolbox - PLS analysis for medical image processing☆18Jun 13, 2022Updated 3 years ago
- Ontology cross-reference and mapping service☆20Dec 12, 2025Updated 3 months ago
- Harmonization of multi-site imaging data with ComBat☆325Jul 7, 2023Updated 2 years ago
- Common brain templates & atlases☆26May 16, 2023Updated 2 years ago
- Brain Cell Type Specific Gene Expression Analysis☆17Dec 27, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆16Jan 20, 2026Updated 2 months ago
- Procedure to create monkey brain surfaces and project results to it☆16Feb 14, 2025Updated last year
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆174Jan 15, 2026Updated 2 months ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆42Jul 21, 2022Updated 3 years ago
- Bash script to compute DTI-ALPS☆74Sep 12, 2025Updated 6 months ago
- A toolbox for dynamic functional connectivity and multiverse analysis☆21Mar 4, 2026Updated 3 weeks ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 3 months ago