Alternatives and similar repositories for ccs

Users that are interested in ccs are comparing it to the libraries listed below

• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆153Updated 2 years ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆201Updated 4 months ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆219Updated 5 months ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆170Updated 6 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆193Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆217Updated 6 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆170Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated this week
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆119Updated 2 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆154Updated 4 months ago
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆154Updated 3 months ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆138Updated 2 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆227Updated 6 months ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆115Updated last week
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆269Updated 5 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆138Updated last week
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆153Updated 3 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• epi2me-labs / wf-transcriptomes
  ☆98Updated 3 weeks ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆215Updated last week
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 4 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆156Updated this week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆113Updated last month
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆109Updated 8 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆187Updated last year
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆170Updated this week
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆191Updated 2 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆193Updated last month