Alternatives and similar repositories for openCyto

Users that are interested in openCyto are comparing it to the libraries listed below

• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆63Updated last month
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆67Updated 3 weeks ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆71Updated this week
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆60Updated 11 months ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆58Updated 4 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆67Updated 2 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 9 months ago
• maggiecrow / DEprior
  ☆15Updated 4 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆79Updated 3 weeks ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆45Updated 3 weeks ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆100Updated last month
• KrishnaswamyLab / phateR
  PHATE dimensionality reduction method implemented in R
  ☆81Updated 4 years ago
• YosefLab / scone
  ☆55Updated 8 months ago
• JinmiaoChenLab / Rphenograph
  Rphenograph: R implementation of the PhenoGraph algorithm
  ☆49Updated 5 years ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆83Updated 3 months ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated last year
• Bioconductor / bioconductor_docker
  Docker Containers for Bioconductor
  ☆87Updated this week
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated 7 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• const-ae / glmGamPoi
  Fit Gamma-Poisson Generalized Linear Models Reliably
  ☆117Updated 7 months ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆68Updated last year
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆74Updated 4 months ago
• caravagnalab / revolver
  Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data
  ☆66Updated 2 years ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 8 years ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆112Updated this week