Alternatives and similar repositories for openCyto:

Users that are interested in openCyto are comparing it to the libraries listed below

• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆59Updated last year
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated last month
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆72Updated last month
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated 2 weeks ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆65Updated 3 weeks ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆57Updated 4 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆57Updated 4 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆121Updated this week
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 5 months ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆66Updated last year
• genesofeve / projectR
  ☆62Updated last month
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆59Updated last year
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆85Updated 5 months ago
• RGLab / flowWorkspace
  flowWorkspace
  ☆45Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆55Updated 3 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆62Updated 3 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆101Updated last week
• YosefLab / scone
  ☆53Updated 2 months ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆90Updated 2 months ago
• catavallejos / BASiCS
  BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…
  ☆83Updated 10 months ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated last year
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 4 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆78Updated last year
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆71Updated this week
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 4 months ago