A package that provides data analysis pipeline for flow cytometry.
☆85Mar 12, 2026Updated 4 months ago
Alternatives and similar repositories for openCyto
Users that are interested in openCyto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize Cytometry data with ggplot2☆65May 27, 2026Updated last month
- Core flow cytometry infrastructure☆60May 27, 2026Updated last month
- Interactive Cytometry Data Analysis☆69Mar 18, 2026Updated 4 months ago
- flowWorkspace☆48May 27, 2026Updated last month
- A GatingML Interface for Cross Platform Cytometry Data Sharing☆35Feb 10, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- c++ library for representing and interacting the gated cytometry data structure☆14Jan 29, 2025Updated last year
- ☆27Apr 18, 2016Updated 10 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆71Dec 13, 2023Updated 2 years ago
- flowStats: algorithms for flow cytometry data analysis using BioConductor tools☆14Jul 19, 2023Updated 3 years ago
- Full annotation using shape-constrained trees☆31Sep 15, 2023Updated 2 years ago
- ☆38Mar 24, 2023Updated 3 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Nov 9, 2015Updated 10 years ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 6 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Representation Learning for detection of phenotype-associated cell subsets☆69Oct 24, 2020Updated 5 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆25Updated this week
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 8 months ago
- Implementation of Selective Clustering Annotated using Modes of Projections☆11May 19, 2020Updated 6 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆48Feb 15, 2017Updated 9 years ago
- An R package with wrappers and pipelines for single cell RNA-seq analysis☆14Jul 10, 2026Updated last week
- ☆15Jan 16, 2024Updated 2 years ago
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 2 months ago
- A data-centric flow/mass cytometry automated analysis framework☆43Jan 22, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 3 months ago
- Citrus Development Code☆31Apr 14, 2024Updated 2 years ago
- Huge-scale, high-performance flow cytometry clustering in Julia☆36Nov 3, 2025Updated 8 months ago
- Literature mining for T cell relations☆23Aug 5, 2022Updated 3 years ago
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆222Updated this week
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- The Monod package fits CME models to sequencing data.☆35Apr 24, 2026Updated 2 months ago
- Spectral unmixing of highly mixed multispectral flow and image cytometry data.☆17Mar 15, 2023Updated 3 years ago
- ☆15Jan 13, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features☆94May 16, 2023Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37May 30, 2026Updated last month
- Processing workflow for COVID-19 single cell data☆17Dec 23, 2021Updated 4 years ago
- R wrapper for Multicore t-SNE☆29Dec 29, 2017Updated 8 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 5 months ago
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago