Alternatives and similar repositories for fcm

Users that are interested in fcm are comparing it to the libraries listed below

• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 9 months ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 8 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 3 years ago
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆20Updated 3 months ago
• ajrichards / htsint
  A Python library to work with high-throughput sequencing data in the context of data integration
  ☆14Updated 8 years ago
• mattmight / calculendar
  A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)
  ☆25Updated 3 years ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 7 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆14Updated 3 years ago
• clintval / genome-browser
  A lightweight Python graphing API for genomic features
  ☆15Updated 3 years ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆20Updated this week
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 10 years ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 8 years ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated last week
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 4 years ago
• StanfordBioinformatics / loom
  A tool for running bioinformatics workflows locally or in the cloud.
  ☆30Updated 5 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 months ago
• mengqvist / DNApy
  Code for DNA plasmid editing.
  ☆43Updated 7 years ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• biomart / BioMart
  ☆21Updated 9 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 8 months ago
• ChillarAnand / fadapa
  FAstqc DAta PArser - A minimal parser to parse FastQC output data.
  ☆16Updated 9 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 8 years ago
• IQTLabs / freqgen
  🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
  ☆17Updated 2 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month