fpbarthel / GLASS
GLASS consortium
☆37Updated 4 years ago
Related projects: ⓘ
- An R package to time somatic mutations☆57Updated 3 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated 9 months ago
- ☆69Updated 8 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆41Updated 3 years ago
- ☆45Updated 11 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 4 years ago
- ☆36Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆44Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆40Updated last month
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆73Updated 2 years ago
- ☆14Updated 3 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆49Updated 2 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- An R package for predicting HR deficiency from mutation contexts☆26Updated last year
- ☆33Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆50Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Tutorial Website☆51Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆29Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆48Updated 3 weeks ago
- Detecting intron retention from RNA-Seq experiments☆52Updated 2 months ago
- Rocking R at UMCCR☆10Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆27Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆68Updated last month
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆68Updated 3 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago