GLASS consortium
☆42Jun 1, 2020Updated 5 years ago
Alternatives and similar repositories for GLASS
Users that are interested in GLASS are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- ☆11Dec 20, 2024Updated last year
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 6 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆18Oct 17, 2025Updated 4 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- hands-on for NGS/SNParray CNV call trainning☆20Jun 13, 2022Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Oct 31, 2022Updated 3 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 9 months ago
- R pkg for Hierarchical Dirichlet Process☆82Jul 18, 2023Updated 2 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- ☆10Jun 25, 2021Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- GREP: Genome for REPositioning drugs☆43Jan 11, 2023Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated last month
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Jul 13, 2019Updated 6 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆11Aug 3, 2018Updated 7 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated last week
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated this week
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- ☆13Nov 2, 2017Updated 8 years ago