williamritchie / IRFinderLinks
Detecting intron retention from RNA-Seq experiments
☆55Updated last year
Alternatives and similar repositories for IRFinder
Users that are interested in IRFinder are comparing it to the libraries listed below
Sorting:
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Tutorial Website☆59Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆83Updated last week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 8 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆73Updated 2 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆38Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- ☆71Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆79Updated 3 years ago