A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
☆33Mar 10, 2023Updated 3 years ago
Alternatives and similar repositories for RNA-seq
Users that are interested in RNA-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated last month
- Fast RNAseq pipeline☆10Mar 17, 2023Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆141May 7, 2021Updated 5 years ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Apr 27, 2023Updated 3 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated last year
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26May 4, 2023Updated 3 years ago
- Guides and reference material for the Workflow Description Language.☆16Feb 12, 2026Updated 3 months ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23May 6, 2026Updated 2 weeks ago
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 3 months ago
- REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability☆14Dec 16, 2023Updated 2 years ago
- Configure workflow/pipeline tests using yaml files.☆69Aug 4, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations…☆17Nov 20, 2024Updated last year
- ☆11Feb 16, 2021Updated 5 years ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Warp Analysis Research Pipelines☆226May 15, 2026Updated last week
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 3 years ago
- Specification for the Workflow Description Language (WDL).☆850May 13, 2026Updated last week
- Educational materials for learning WDL☆129Mar 2, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆14May 23, 2016Updated 10 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- ☆16Aug 8, 2025Updated 9 months ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- ENCODE ChIP-seq pipeline☆278Feb 15, 2024Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆52Aug 9, 2025Updated 9 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 5 years ago
- ☆23Apr 13, 2026Updated last month
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.☆18Apr 4, 2025Updated last year
- Exon-Intron Split Analysis (EISA) in R☆17Apr 29, 2026Updated 3 weeks ago
- Epigenomic enrichment analysis of age-related genomic regions☆17Nov 2, 2018Updated 7 years ago
- ☆21Dec 23, 2024Updated last year
- ☆165Apr 13, 2026Updated last month
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago