timflutre / trimmomaticLinks
Read trimming tool for Illumina NGS data.
☆149Updated 10 years ago
Alternatives and similar repositories for trimmomatic
Users that are interested in trimmomatic are comparing it to the libraries listed below
Sorting:
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 5 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- TransDecoder source☆299Updated 4 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆232Updated 7 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆257Updated 6 months ago
- Count bases in BAM/CRAM files☆323Updated 4 years ago
- Windowed Adaptive Trimming for fastq files using quality☆227Updated 8 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆287Updated 5 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆246Updated last week
- 3D de novo assembly (3D DNA) pipeline☆221Updated 2 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 6 months ago
- A minimap2 frontend for PacBio native data formats☆210Updated 2 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 3 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated 2 months ago
- ☆151Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆340Updated 10 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆219Updated 2 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week
- An overview of all nanopack tools☆280Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆202Updated 7 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆276Updated 4 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆376Updated 3 years ago
- Next generation sequencing reads de novo assembler.☆239Updated 4 months ago