Genome Assembly and Annotation Service code
☆221Feb 27, 2026Updated 6 months ago
Alternatives and similar repositories for GAAS
Users that are interested in GAAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆589Sep 7, 2026Updated 2 weeks ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated 7 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 4 months ago
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆131Jun 18, 2026Updated 3 months ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 2 months ago
- VGP repository for the genome assembly working group☆194Mar 31, 2026Updated 5 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 5 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆467Jun 17, 2026Updated 3 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆110Dec 11, 2023Updated 2 years ago
- Fast genome analysis from unassembled short reads☆327Apr 8, 2024Updated 2 years ago
- Best practices and workflow for genome annotation☆80Apr 14, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- ☆13Mar 12, 2020Updated 6 years ago
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆188Apr 12, 2023Updated 3 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆98Nov 23, 2024Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 3 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆115Jan 30, 2026Updated 7 months ago
- An accurate GFF3/GTF lift over pipeline☆557Aug 1, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Using Deep Learning to predict gene annotations☆307Jul 22, 2026Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆314Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆500Jul 7, 2026Updated 2 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆283Sep 26, 2023Updated 2 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 5 months ago
- This is the standalone version of the EviAnn pipeline☆186Sep 10, 2026Updated last week
- A tool to circularize genome assemblies☆259Apr 6, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆469Sep 10, 2026Updated last week
- PASA software☆204Feb 12, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 3 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆155Sep 10, 2026Updated last week
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Jul 22, 2026Updated 2 months ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated 2 weeks ago