NBISweden / GAASLinks
Genome Assembly and Annotation Service code
☆214Updated last year
Alternatives and similar repositories for GAAS
Users that are interested in GAAS are comparing it to the libraries listed below
Sorting:
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆266Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated 2 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 9 months ago
- Tool to plot synteny and structural rearrangements between genomes☆318Updated 4 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆271Updated 6 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆140Updated 10 years ago
- TransDecoder source☆296Updated 10 months ago
- An overview of all nanopack tools☆265Updated 2 years ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- De-Novo Repeat Discovery Tool☆216Updated 2 weeks ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆271Updated 3 weeks ago
- Nanopore demultiplexing, QC and alignment pipeline☆207Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆218Updated last month
- ☆213Updated 6 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆190Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆208Updated last month
- 3D de novo assembly (3D DNA) pipeline☆214Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆313Updated 2 years ago
- A tool to circularize genome assemblies☆245Updated last year
- Assembly and binning of metagenomes☆243Updated this week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆266Updated 7 months ago
- Finds SNP sites from a multi-FASTA alignment file☆264Updated 4 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- quality filtering tool for long reads☆358Updated last year
- Classifier for metagenomic sequences☆261Updated last month
- PASA software☆192Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 9 months ago