cbg-ethz / V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
☆136Updated last week
Alternatives and similar repositories for V-pipe
Users that are interested in V-pipe are comparing it to the libraries listed below
Sorting:
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated 2 weeks ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated 2 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated last month
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆149Updated 11 months ago
- a tool for inferring species tree from sequencing reads☆149Updated 3 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆201Updated 8 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆212Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆175Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- ☆208Updated 3 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆218Updated last week
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆161Updated last month
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆114Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆153Updated last year
- Pan-genome wide association studies☆195Updated 11 months ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆120Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆223Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 3 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 4 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆133Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆162Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆147Updated last week
- Fast and accurately polish the genome generated by long reads.☆223Updated 4 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 8 months ago
- A package for designing compact and comprehensive capture probe sets.☆85Updated last year
- A sequencing simulator☆197Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago