Alternatives and similar repositories for GREIN

Users that are interested in GREIN are comparing it to the libraries listed below

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆62Updated 2 months ago
• andrewrech / antigen.garnish
  ☆49Updated 3 years ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆78Updated this week
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated this week
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated 3 months ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆28Updated 10 years ago
• crazyhottommy / machine-learning-resource
  ☆83Updated 9 months ago
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆43Updated last week
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• Huber-group-EMBL / biomaRt
  R package providing query functionality to BioMart instances like Ensembl
  ☆43Updated last week
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆58Updated 4 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• gexijin / idepGolem
  ☆41Updated last week
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆51Updated 11 months ago
• francescojm / CRISPRcleanR
  Unsupervised correction of gene independent cell responses to CRISPR-cas9
  ☆50Updated 2 years ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆50Updated 2 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• PierreBSC / Viral-Track
  ☆62Updated 5 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆36Updated 4 years ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆27Updated 9 months ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆34Updated 5 years ago
• ktrns / scrnaseq
  Workflow for single-cell RNA-seq analysis using Seurat
  ☆45Updated last year
• bzhanglab / WebGestaltR
  R package for WebGestalt
  ☆37Updated 4 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆73Updated last year
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• rhondabacher / ISMB2019_SingleCellTutorial
  Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…
  ☆41Updated 6 years ago