A short tutorial on how to use RSEM
☆138Apr 19, 2020Updated 5 years ago
Alternatives and similar repositories for RSEM_tutorial
Users that are interested in RSEM_tutorial are comparing it to the libraries listed below
Sorting:
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆461Updated this week
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 4 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Mar 8, 2019Updated 6 years ago
- RNA-seq aligner☆2,146Mar 18, 2025Updated 11 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆537Feb 2, 2026Updated last month
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Mar 3, 2017Updated 9 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated last year
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆862May 29, 2024Updated last year
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,416May 31, 2023Updated 2 years ago
- ☆19Jun 8, 2023Updated 2 years ago
- ☆445Jun 15, 2020Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Jan 13, 2022Updated 4 years ago
- ☆22Jul 27, 2023Updated 2 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- IDR☆175Sep 18, 2018Updated 7 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 3 years ago
- Web-Application for the cross-visualization of HiC and ChIP-seq data.☆18Feb 17, 2026Updated 2 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆240Dec 2, 2025Updated 3 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆883Feb 7, 2025Updated last year
- ☆29Mar 16, 2023Updated 2 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,659Feb 15, 2026Updated 2 weeks ago
- ☆157Nov 3, 2022Updated 3 years ago
- CRAM format specification and java API for read data.☆59Oct 2, 2018Updated 7 years ago
- ☆320Mar 31, 2020Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 8 months ago
- Helper script for bioconductor/bioconductor_docker☆13Updated this week
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Jan 3, 2020Updated 6 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆117Apr 26, 2025Updated 10 months ago
- ENCODE ATAC-seq pipeline☆446Jul 18, 2024Updated last year
- An R-based interface for loom files☆67Jul 9, 2020Updated 5 years ago
- Intro to ChIPseq using HPC☆320Jan 30, 2023Updated 3 years ago
- binned motif enrichment analysis and visualisation☆45Jan 27, 2026Updated last month
- R package for robust clustering of single cell RNA sequencing data☆40Jul 10, 2023Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆751Jul 23, 2025Updated 7 months ago