Alternatives and similar repositories for RSEM_tutorial

Users that are interested in RSEM_tutorial are comparing it to the libraries listed below

• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆123Updated 5 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆193Updated 2 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆155Updated 2 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆224Updated last year
• harvardinformatics / ATAC-seq
  ☆138Updated 6 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• yupenghe / methylpy
  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
  ☆145Updated 2 years ago
• crazyhottommy / pyflow-ChIPseq
  a snakemake pipeline to process ChIP-seq files from GEO or in-house
  ☆110Updated 5 years ago
• Xinglab / rmats2sashimiplot
  ☆151Updated 3 months ago
• kundajelab / atac_dnase_pipelines
  ATAC-seq and DNase-seq processing pipeline
  ☆166Updated 3 years ago
• kundajelab / chipseq_pipeline
  AQUAS TF and histone ChIP-seq pipeline
  ☆110Updated 3 years ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆210Updated 2 months ago
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆95Updated 4 years ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆223Updated 4 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 3 years ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆112Updated 2 years ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆188Updated 5 months ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆167Updated 3 months ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆219Updated 3 weeks ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆267Updated 2 years ago
• virajbdeshpande / AmpliconArchitect
  AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …
  ☆152Updated last year
• nboley / idr
  IDR
  ☆172Updated 6 years ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆246Updated 3 weeks ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 4 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆262Updated 7 months ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆168Updated 10 months ago
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆280Updated last year
• Xinglab / rmats-turbo
  ☆274Updated 9 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆320Updated 4 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆140Updated last year