A collection of scripts and notes related to genomics and bioinformatics
☆229Jul 17, 2026Updated this week
Alternatives and similar repositories for genomics
Users that are interested in genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipelines for genomic sequencing data☆74Jul 6, 2026Updated 2 weeks ago
- ☆13Sep 22, 2017Updated 8 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- Unix, R and python tools for genomics and data science☆1,403Aug 25, 2025Updated 10 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNAseq analysis notes from Ming Tang☆1,093Nov 15, 2021Updated 4 years ago
- Gene orthologs for model organisms in a tidy data format☆16Sep 29, 2022Updated 3 years ago
- Tools to process and analyze deep sequencing data.☆762Updated this week
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated last year
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆169Jun 22, 2026Updated last month
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆372Jul 6, 2026Updated 2 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 10 months ago
- Bioinformatics Workbook repository☆209Apr 18, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Customizable workflows based on snakemake and python for the analysis of NGS data☆406Updated this week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆918Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆287May 11, 2026Updated 2 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,479Jun 29, 2026Updated 3 weeks ago
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 3 years ago
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 6 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,429May 31, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,810Jul 14, 2026Updated last week
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆498Feb 25, 2026Updated 4 months ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆336May 18, 2026Updated 2 months ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jun 19, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- Introduction to the Command Line for Genomics☆70Updated this week
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆237May 15, 2025Updated last year
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- integrated RNA-seq Analysis Pipeline☆84Feb 6, 2019Updated 7 years ago