A collection of scripts and notes related to genomics and bioinformatics
☆222Dec 8, 2025Updated 3 months ago
Alternatives and similar repositories for genomics
Users that are interested in genomics are comparing it to the libraries listed below
Sorting:
- Analysis pipelines for genomic sequencing data☆73Feb 3, 2026Updated last month
- Data Wrangling and Processing for Genomics☆73Updated this week
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆13Dec 6, 2021Updated 4 years ago
- Unix, R and python tools for genomics and data science☆1,372Aug 25, 2025Updated 6 months ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆485Feb 25, 2026Updated last week
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- Tools to process and analyze deep sequencing data.☆752Jul 23, 2025Updated 7 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆399Jan 23, 2026Updated last month
- RNAseq analysis notes from Ming Tang☆1,069Nov 15, 2021Updated 4 years ago
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 2 years ago
- ChIP-seq analysis notes from Ming Tang☆842Aug 5, 2024Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Mar 9, 2023Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,428Updated this week
- R package wrapping bedtools☆44Mar 19, 2025Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 6 months ago
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- Bioinformatics Workbook repository☆205Dec 17, 2025Updated 2 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 10 months ago
- ☆30Sep 22, 2023Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 4 months ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 3 years ago
- Visualization toolkit for differential splicing events☆17Updated this week
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆864May 29, 2024Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- R package to do the Ligand Receptor Analysis Visualization☆49Feb 13, 2026Updated 3 weeks ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Updated this week
- integrated RNA-seq Analysis Pipeline☆84Feb 6, 2019Updated 7 years ago
- Structural variation caller using third generation sequencing☆637Dec 18, 2025Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Nov 6, 2025Updated 4 months ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 9 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,668Mar 1, 2026Updated last week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆325Apr 23, 2024Updated last year
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,418May 31, 2023Updated 2 years ago