igordot / genomics
A collection of scripts and notes related to genomics and bioinformatics
☆207Updated last month
Alternatives and similar repositories for genomics:
Users that are interested in genomics are comparing it to the libraries listed below
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- dN/dS methods to quantify selection in cancer and somatic evolution☆220Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆210Updated last week
- Application for making ENCODE Blacklists☆294Updated 3 years ago
- Detecting sites of genomic enrichment☆190Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆196Updated last week
- parallel fastq-dump wrapper☆288Updated last year
- Web application to explore the Sequence Read Archive.☆213Updated 2 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- ☆147Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆264Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 3 weeks ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆234Updated this week
- ASCAT R package☆176Updated 3 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆140Updated last year
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆145Updated 6 months ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 3 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated last month
- Download FASTQ files from SRA or ENA repositories.☆309Updated 5 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 4 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆159Updated 3 weeks ago
- ChIP peak Annotation, Comparison and Visualization☆234Updated last month