Python-based framework for computational immunomics
☆15Apr 1, 2026Updated last week
Alternatives and similar repositories for epytope
Users that are interested in epytope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 9 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆51Apr 1, 2026Updated last week
- Python client for PRIDE Archive Rest API.☆38Feb 6, 2026Updated 2 months ago
- Scalable genomic analysis pipelines, written in WDL☆12Mar 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Kourami: Graph-guided assembly for HLA alleles☆39May 21, 2019Updated 6 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Apr 2, 2026Updated last week
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated this week
- rebuilds and completes models of protein complexes using AlphaFold2☆16Mar 6, 2026Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 10 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆64Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Updated this week
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated last month
- Precision HLA typing from next-generation sequencing data☆79Apr 2, 2026Updated last week
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- ☆15Apr 3, 2025Updated last year
- ☆13Aug 20, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated 8 months ago
- Merge fastq files split over lanes☆20Feb 13, 2018Updated 8 years ago
- Unified repository for the GA4GH Beacon v2 API standard☆33Mar 16, 2026Updated 3 weeks ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 5 years ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆16Mar 16, 2026Updated 3 weeks ago
- Prediction of glycopeptide fragment mass spectra by deep learning☆11Feb 20, 2024Updated 2 years ago
- A script to run HLA typing tools from next generation sequencing data☆12Jan 4, 2023Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jan 16, 2026Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆15Nov 8, 2024Updated last year
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆26Updated this week
- Peptide-MHC I binding affinity prediction☆243Mar 30, 2026Updated 2 weeks ago
- Data Processing Kitchen Sink for proteomics data☆13Updated this week
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Nov 25, 2025Updated 4 months ago