KohlbacherLab / epytope
Python-based framework for computational immunomics
☆14Updated last year
Alternatives and similar repositories for epytope:
Users that are interested in epytope are comparing it to the libraries listed below
- ☆20Updated 3 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated this week
- Package to Score Sequences using Rule Set 3☆11Updated 10 months ago
- ClinVar Mapping and Annotation Toolkit☆19Updated last month
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆26Updated this week
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last year
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated 7 months ago
- ☆38Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Absolute quantification package based on quantms.io☆11Updated this week
- Infer selection pressures on features of amino acid CDR3 sequences.☆23Updated 9 months ago
- A python library for creating simulated regulatory DNA sequences☆38Updated last year
- ☆56Updated 8 months ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 5 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆43Updated 3 weeks ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated last year
- A python package for showing JBrowse views☆23Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆49Updated 3 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated this week
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆31Updated 6 months ago
- Python package to analyze DNA methylation data☆39Updated 2 months ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆39Updated last month
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Python biomart API☆64Updated last year
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆19Updated 5 months ago
- ☆47Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆94Updated 3 months ago
- Collection of papers related to BCR repertoire analyses☆17Updated 2 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago