KohlbacherLab / epytope
Python-based framework for computational immunomics
☆13Updated last year
Alternatives and similar repositories for epytope:
Users that are interested in epytope are comparing it to the libraries listed below
- ☆19Updated last week
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated this week
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆42Updated 3 weeks ago
- Absolute quantification package based on quantms.io☆13Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 10 months ago
- ☆58Updated 10 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated last week
- Package to Score Sequences using Rule Set 3☆11Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41Updated last week
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆45Updated 3 weeks ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆39Updated this week
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated 11 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 8 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆17Updated 2 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆11Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆50Updated 3 years ago
- ☆37Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆31Updated 2 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆32Updated last month
- Functional Associations using Variational Autoencoders☆39Updated last month
- IPAW: a Nextflow workflow for proteogenomics☆27Updated 7 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆19Updated last month
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago