Alternatives and similar repositories for VCF-Simplify

Users that are interested in VCF-Simplify are comparing it to the libraries listed below

• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆54Updated 11 months ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆80Updated last month
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 months ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆52Updated 5 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated last year
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆49Updated this week
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 2 years ago
• zd1 / telseq
  A software for calculating telomere length
  ☆72Updated 7 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• kevinblighe / ClinicalGradeDNAseq
  Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…
  ☆26Updated 5 years ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆38Updated last year
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆55Updated last year
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• BimberLab / DISCVRSeq
  A collection of command line tools for working with sequencing data
  ☆52Updated this week
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆35Updated last year
• icebert / pblat
  parallelized blat with multi-threads support
  ☆53Updated 9 months ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆64Updated 4 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆48Updated 9 months ago