BioInfoTools / BBMapLinks
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
☆239Updated 4 years ago
Alternatives and similar repositories for BBMap
Users that are interested in BBMap are comparing it to the libraries listed below
Sorting:
- TransDecoder source☆296Updated 10 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆350Updated 3 weeks ago
- An overview of all nanopack tools☆266Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆318Updated 4 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆273Updated 6 months ago
- quality filtering tool for long reads☆363Updated last week
- Genome Assembly and Annotation Service code☆215Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆330Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆269Updated last week
- Fast and accurate de novo assembler for long reads☆392Updated last year
- Eukaryotic Genome Annotation Pipeline☆361Updated last month
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆268Updated 8 months ago
- ☆263Updated last week
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆313Updated 2 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆273Updated last week
- Read trimming tool for Illumina NGS data.☆141Updated 10 years ago
- adapter trimmer for Oxford Nanopore reads☆369Updated last year
- Classifier for metagenomic sequences☆264Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆361Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated 10 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆422Updated 7 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆273Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆381Updated 2 months ago
- Assembly and binning of metagenomes☆244Updated last week
- Extensive de-novo TE Annotator☆400Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆351Updated last month
- Finds SNP sites from a multi-FASTA alignment file☆264Updated 4 years ago