☆322Sep 28, 2026Updated last month
Alternatives and similar repositories for Trimmomatic
Users that are interested in Trimmomatic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A quality control analysis tool for high throughput sequencing data☆626Oct 7, 2026Updated 3 weeks ago
- SPAdes Genome Assembler☆967Oct 22, 2026Updated last week
- A fast and sensitive gapped read aligner☆812Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,452Oct 7, 2026Updated 3 weeks ago
- Genome assembly evaluation tool☆522Jun 10, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The second version of the Kraken taxonomic sequence classification system☆949Updated this week
- Read trimming tool for Illumina NGS data.☆151Mar 10, 2015Updated 11 years ago
- Fast genome-wide functional annotation through orthology assignment☆801Aug 13, 2026Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,261May 19, 2026Updated 5 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆412Mar 2, 2026Updated 7 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆954Apr 3, 2026Updated 6 months ago
- SRA Tools☆1,372Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,497Updated this week
- Ultra-fast and memory-efficient (meta-)genome assembler☆730Oct 28, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,972Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆486Sep 14, 2026Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆358Mar 16, 2026Updated 7 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,565Jun 1, 2025Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆429Oct 13, 2026Updated 2 weeks ago
- Graph-based alignment (Hierarchical Graph FM index)☆546Jul 31, 2026Updated 2 months ago
- Prodigal Gene Prediction Software☆553Jan 23, 2024Updated 2 years ago
- The next version of bwa-mem☆868Oct 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆678Jul 7, 2026Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆902Apr 23, 2026Updated 6 months ago
- An updated pipeline for pangenome investigation☆378Updated this week
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,769Aug 7, 2026Updated 2 months ago
- Mummer alignment tool☆579Feb 4, 2025Updated last year
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,082Jul 31, 2026Updated 2 months ago
- Official code repository for GATK versions 4 and up☆2,009Updated this week
- Cutadapt removes adapter sequences from sequencing reads☆590Sep 21, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rapid prokaryotic genome annotation☆998Jan 6, 2026Updated 9 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,605Updated this week
- A genome alignment and visualization system☆36Nov 15, 2020Updated 5 years ago
- Accelerated BLAST compatible local sequence aligner.☆1,332Updated this week
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆156Oct 15, 2026Updated 2 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆516Jul 17, 2026Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year