usadellab / Trimmomatic
☆242Updated 11 months ago
Alternatives and similar repositories for Trimmomatic:
Users that are interested in Trimmomatic are comparing it to the libraries listed below
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- TransDecoder source☆288Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆337Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆268Updated 3 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆338Updated last week
- Read trimming tool for Illumina NGS data.☆134Updated 10 years ago
- Fast and accurate de novo assembler for long reads☆389Updated 11 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆400Updated 3 months ago
- Transcript assembly and quantification for RNA-Seq☆433Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆505Updated last month
- Fast genome-wide functional annotation through orthology assignment☆614Updated 11 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆419Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆409Updated 4 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆370Updated 8 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆262Updated 4 months ago
- adapter trimmer for Oxford Nanopore reads☆358Updated 11 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆500Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆505Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆361Updated 3 years ago
- ☆272Updated 2 months ago
- Genome Assembly and Annotation Service code☆211Updated last year
- parallel fastq-dump wrapper☆292Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆209Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆326Updated 2 months ago
- Nextflow training material☆163Updated this week
- RNA-seq workflow using STAR and DESeq2☆339Updated 9 months ago
- Download FASTQ files from SRA or ENA repositories.☆323Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆251Updated last week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year