usadellab / TrimmomaticLinks
☆286Updated 3 months ago
Alternatives and similar repositories for Trimmomatic
Users that are interested in Trimmomatic are comparing it to the libraries listed below
Sorting:
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 4 years ago
- TransDecoder source☆299Updated 4 months ago
- An accurate GFF3/GTF lift over pipeline☆525Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆455Updated last year
- adapter trimmer for Oxford Nanopore reads☆380Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 6 months ago
- Fast and accurate de novo assembler for long reads☆398Updated last year
- Eukaryotic Genome Annotation Pipeline☆378Updated 2 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆445Updated 3 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆556Updated 3 weeks ago
- Mummer alignment tool☆548Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆376Updated 3 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆537Updated 2 weeks ago
- Plotting scripts for long read sequencing data☆532Updated 2 months ago
- Transcript assembly and quantification for RNA-Seq☆485Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆390Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆456Updated last month
- Fast genome-wide functional annotation through orthology assignment☆697Updated 7 months ago
- Plot structural variant signals from many BAMs and CRAMs☆558Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆366Updated this week
- Sequence correction provided by ONT Research☆499Updated 2 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆285Updated 5 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆293Updated 5 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆553Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- Align proteins to genomes with splicing and frameshift☆395Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- parallel fastq-dump wrapper☆303Updated 2 years ago