mksamur / RTCGAToolboxLinks
☆18Updated 3 months ago
Alternatives and similar repositories for RTCGAToolbox
Users that are interested in RTCGAToolbox are comparing it to the libraries listed below
Sorting:
- Bioconductor package for management of multi-assay data☆72Updated last month
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 9 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 2 months ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Updated 4 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 10 months ago
- [DEPRECATED] Docker containers for Bioconductor☆49Updated 2 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆89Updated 4 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated last month
- Explore design matrices interactively with R/Shiny☆37Updated last week
- Glimma R package☆50Updated last year
- MSigDB gene sets for multiple organisms in a tidy data format☆82Updated 2 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Updated 9 months ago
- Devel repository for minfi☆60Updated last year
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆79Updated this week
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated last week
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated 5 months ago
- Project Website:☆54Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- DESeq2 or edgeR☆22Updated 9 years ago
- Genome Interval Arithmetic in R☆93Updated last month