mksamur / RTCGAToolboxLinks
☆18Updated 2 months ago
Alternatives and similar repositories for RTCGAToolbox
Users that are interested in RTCGAToolbox are comparing it to the libraries listed below
Sorting:
- Bioconductor package for management of multi-assay data☆73Updated 2 weeks ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Updated 4 years ago
- Glimma R package☆50Updated last year
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 8 months ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆89Updated 4 years ago
- [DEPRECATED] Docker containers for Bioconductor☆49Updated 2 years ago
- Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries.…☆91Updated 4 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- Devel repository for minfi☆61Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 8 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Explore design matrices interactively with R/Shiny☆37Updated 4 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- fastqcr: Quality Control of Sequencing Data☆74Updated 2 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 9 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 9 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago
- Course material for introductory R / Bioconductor courses☆44Updated 2 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Grid and ggplot2 based visualization for biological data☆115Updated 3 weeks ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated 4 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated 2 weeks ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Updated 2 years ago
- An R Interface to the ImmuneSpace database portal☆24Updated last year
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago