PacificBiosciences / barcodingLinks
Lima - Demultiplex Barcoded PacBio Samples
☆66Updated 2 months ago
Alternatives and similar repositories for barcoding
Users that are interested in barcoding are comparing it to the libraries listed below
Sorting:
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆109Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- PHAST☆74Updated last month
- Somatic structural variant caller for long-read data☆78Updated last month
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆99Updated last week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- ☆49Updated 11 months ago
- A collection of command line tools for working with sequencing data☆51Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- SV caller for nanopore data☆91Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 11 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆102Updated 2 months ago
- ☆49Updated 8 months ago