Alternatives and similar repositories for pyMSAviz

Users that are interested in pyMSAviz are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆79Updated 2 weeks ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 4 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆174Updated last month
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆34Updated 5 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆80Updated this week
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆36Updated 3 weeks ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆106Updated 9 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 10 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆81Updated this week
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆32Updated 6 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated 8 months ago
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated last month
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆59Updated this week
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆21Updated 2 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆136Updated 3 weeks ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆79Updated 3 weeks ago
• ntranoslab / esm-variants
  ☆74Updated last year
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆121Updated 3 months ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆132Updated 3 weeks ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆109Updated last month
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆36Updated 9 months ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆77Updated 2 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 months ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆156Updated 8 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆32Updated last month