MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
☆205Dec 1, 2024Updated last year
Alternatives and similar repositories for pyMSAviz
Users that are interested in pyMSAviz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆68Sep 14, 2024Updated 2 years ago
- A genome visualization python package for comparative genomics☆427Jun 14, 2026Updated 4 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆96May 3, 2025Updated last year
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 10 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆85May 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)☆1,128Jun 14, 2026Updated 4 months ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- blastn2dotplots: multiple dot-plot visualizer☆29Sep 15, 2025Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- In-silico PCR, primer design and padlock design for in-situ sequencing☆55Aug 19, 2026Updated 2 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆46Mar 24, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆20Nov 29, 2024Updated last year
- ☆29May 12, 2026Updated 5 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated 11 months ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 4 months ago
- ☆16Oct 8, 2026Updated 3 weeks ago
- Draw a dot plot from a paf alignment☆47May 9, 2026Updated 5 months ago
- High-precision TE Annotator☆168Dec 4, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Jun 7, 2024Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Randomly subsample sequencing reads or alignments☆279Oct 19, 2026Updated 2 weeks ago
- ☆27Jun 27, 2026Updated 4 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 7 months ago
- An R package designed for drawing gene arrow maps☆102Updated this week
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- ☆11Oct 7, 2025Updated last year
- Find clustered hits from a BLAST search☆153Aug 6, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆26Apr 25, 2024Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆290Sep 9, 2026Updated last month
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 11 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆273Updated this week
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated 2 years ago
- ☆11Jun 2, 2025Updated last year