Alternatives and similar repositories for pyMSAviz

Users that are interested in pyMSAviz are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated 3 weeks ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆96Updated 9 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆196Updated last month
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆155Updated 2 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated last month
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆26Updated 2 years ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆148Updated 3 weeks ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆76Updated 3 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆41Updated 3 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆87Updated 3 weeks ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆210Updated 3 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆133Updated 4 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆176Updated 2 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated last year
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated last month
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated 3 weeks ago
• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• Merck / bgc-pipeline
  ☆12Updated 11 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated 2 weeks ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆60Updated 5 years ago
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆116Updated last year
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆83Updated 7 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆48Updated 6 years ago
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆18Updated 2 weeks ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated 2 years ago