Alternatives and similar repositories for fcs-gx

Users that are interested in fcs-gx are comparing it to the libraries listed below

• DessimozLab / OMArk
  ☆74Updated this week
• i10labtitech / GINGER
  ☆28Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆15Updated 2 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆57Updated last month
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆19Updated 5 years ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 8 months ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆28Updated 2 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 5 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated 10 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated 10 months ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆31Updated 6 months ago
• google / deeppolisher
  Transformer-based sequence correction method for genome assembly polishing
  ☆54Updated 4 months ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• yhw320 / PanSyn
  ☆20Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆60Updated last month
• kjenike / panagram
  ☆63Updated last week
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆75Updated 8 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆71Updated 3 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆42Updated 5 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆43Updated last week
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆63Updated 6 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆81Updated 2 weeks ago