mobiusklein / mzdata

Related projects ⓘ

Alternatives and complementary repositories for mzdata

• MannLabs / timsrust
  ☆24Updated 2 weeks ago
• EuBIC / EuBIC2023
  EuBIC 2023 developer's meeting
  ☆13Updated last year
• snijderlab / rustyms
  A rust library for parsing Pro Forma peptides and matching them against MS spectra
  ☆16Updated this week
• gtluu / timsconvert
  ☆31Updated last month
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆36Updated this week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆30Updated 6 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆15Updated 9 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated this week
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated 4 months ago
• YasinEl / mzRAPP
  Tool for reliability assessment of omics peprocessing
  ☆10Updated 8 months ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆14Updated this week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆25Updated last week
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated last month
• eMetaboHUB / MS-CleanR
  ☆25Updated 11 months ago
• kusterlab / universal_spectrum_explorer
  ☆14Updated 2 years ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆33Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆28Updated this week
• nwamsley1 / Pioneer.jl
  ☆14Updated this week
• fgcz / rawrr
  Access Orbitrap data in R lang using C# mono assembly - bioconductor package
  ☆54Updated last week
• HUPO-PSI / mzTab
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆39Updated 2 months ago
• MatteoLacki / timspy
  ☆17Updated 3 years ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆18Updated last month
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆17Updated 3 weeks ago
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆18Updated last year
• bittremieux / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆26Updated last week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆27Updated 10 months ago
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 3 years ago