This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention time and fragmentation).
☆10Nov 22, 2024Updated last year
Alternatives and similar repositories for elfragmentador
Users that are interested in elfragmentador are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆26Aug 8, 2026Updated 3 weeks ago
- ☆35Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Updated this week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 4 years ago
- A python package for fast post translational modification localization, powered by Cython.☆21Dec 15, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A deep learning toolkit for mass spectrometry☆95Aug 16, 2026Updated 3 weeks ago
- A tool for summarizing open search results☆17May 5, 2026Updated 4 months ago
- Computational analysis for mass spectrometry-based proteomics data☆22Feb 22, 2026Updated 6 months ago
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 5 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Updated this week
- ☆33May 27, 2026Updated 3 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated 2 weeks ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Oct 23, 2022Updated 3 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆24Apr 17, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Aug 19, 2026Updated 2 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated last month
- Synthetic mzML writer☆14Mar 10, 2025Updated last year
- A tool for large scale omics datasets evaluation☆26Jun 14, 2023Updated 3 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Updated this week
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Updated this week
- Is a mkdocs plugin to make reproducible documentation with quarto☆20May 1, 2026Updated 4 months ago
- ☆13Jan 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- A programmable and modular LC/MS simulator in Python☆25Jul 3, 2026Updated 2 months ago
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆83Aug 15, 2026Updated 3 weeks ago
- GlyCombo, a combinatorial glycan composition assignment tool☆13May 4, 2026Updated 4 months ago
- Platform independent command line tool for analysis of mass spectrometry data.☆15Dec 26, 2022Updated 3 years ago
- Mass spectrometry data visualization☆39Nov 30, 2020Updated 5 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆55Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spectral library searching using approximate nearest neighbor techniques.