jspaezp / elfragmentadorLinks
This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention time and fragmentation).
☆10Updated 7 months ago
Alternatives and similar repositories for elfragmentador
Users that are interested in elfragmentador are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- ☆27Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- ☆26Updated last year
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated last month
- Instrument Application Programming Interface☆47Updated 5 months ago
- ☆38Updated 4 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- Convert MSP files into a database☆10Updated 4 years ago
- An open-source Python package to unify raw MS data accession and storage.☆26Updated 2 weeks ago
- ☆20Updated 4 years ago
- asari, metabolomics data preprocessing☆50Updated this week
- Mass spectrometry data visualization☆36Updated 4 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated 2 years ago
- A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation☆32Updated this week
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 2 weeks ago
- ☆13Updated last month
- Ms2 basEd saMple vectOrization (memo) package☆17Updated 2 years ago
- Democratizing ML in proteomics☆37Updated 3 weeks ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆29Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆21Updated 2 months ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆53Updated 3 weeks ago
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 4 years ago
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆57Updated last week
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago