jspaezp / elfragmentadorLinks
This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention time and fragmentation).
☆11Updated 11 months ago
Alternatives and similar repositories for elfragmentador
Users that are interested in elfragmentador are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- ☆28Updated 5 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last week
- ☆27Updated 2 years ago
- A Python interface to proteomics data repositories☆35Updated 4 months ago
- Instrument Application Programming Interface☆51Updated last month
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- ☆22Updated 4 years ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆35Updated last week
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 3 years ago
- Convert MSP files into a database☆10Updated 4 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- ☆42Updated 7 months ago
- Democratizing ML in proteomics☆44Updated 2 months ago
- An open-source Python package to unify raw MS data accession and storage.☆28Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆22Updated 3 months ago
- The Multiplierz Proteomics Library☆24Updated last year
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆22Updated 9 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆27Updated 11 months ago
- asari, metabolomics data preprocessing☆54Updated this week
- ☆13Updated last year
- ☆20Updated 8 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated last week
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago