jspaezp / elfragmentadorLinks
This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention time and fragmentation).
☆11Updated 9 months ago
Alternatives and similar repositories for elfragmentador
Users that are interested in elfragmentador are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆47Updated this week
- ☆27Updated 3 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- ☆20Updated 4 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 months ago
- Instrument Application Programming Interface☆49Updated 6 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated 3 weeks ago
- ☆26Updated last year
- A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation☆34Updated this week
- ☆39Updated 5 months ago
- asari, metabolomics data preprocessing☆51Updated 3 weeks ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆21Updated last month
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆22Updated 7 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆47Updated last week
- A Python interface to proteomics data repositories☆35Updated 2 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 3 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Updated 2 months ago
- ☆13Updated last year
- Democratizing ML in proteomics☆43Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- Convert MSP files into a database☆10Updated 4 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆27Updated 3 weeks ago
- Mass spectrometry data visualization☆36Updated 4 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 2 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆60Updated 2 months ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- An open-source Python package to unify raw MS data accession and storage.☆27Updated this week