This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention time and fragmentation).
☆10Nov 22, 2024Updated last year
Alternatives and similar repositories for elfragmentador
Users that are interested in elfragmentador are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Oct 23, 2026Updated 2 weeks ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆26Aug 8, 2026Updated 2 months ago
- yHydra is a GPU-accelerated open search for MS-based proteomics data.☆11Jan 19, 2025Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆53Sep 1, 2026Updated 2 months ago
- A python package for fast post translational modification localization, powered by Cython.☆21Dec 15, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆15Aug 25, 2022Updated 4 years ago
- A tool for summarizing open search results☆17Oct 29, 2026Updated last week
- A deep learning toolkit for mass spectrometry☆96Oct 9, 2026Updated 3 weeks ago
- Python bindings to access bruker mass spec data☆13Dec 10, 2024Updated last year
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆18Oct 21, 2026Updated 2 weeks ago
- Computational analysis for mass spectrometry-based proteomics data☆22Oct 29, 2026Updated last week
- A diaPASEF spectrum-centric analysis tool☆13Mar 23, 2026Updated 7 months ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Oct 23, 2022Updated 4 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Aug 19, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆33Sep 24, 2026Updated last month
- Avant-garde (AvG) is a new tool to refine Data-Independent Acquisition (and Parallel Reaction Monitoring) by removing interfered transiti…☆11May 7, 2021Updated 5 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆24Apr 17, 2026Updated 6 months ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆53Updated this week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆32Jul 16, 2026Updated 3 months ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- A tool for large scale omics datasets evaluation☆27Jun 14, 2023Updated 3 years ago
- Synthetic mzML writer☆14Mar 10, 2025Updated last year
- A Snakemake executor plugin for AWS Batch☆12Oct 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Is a mkdocs plugin to make reproducible documentation with quarto☆20May 1, 2026Updated 6 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated 2 months ago
- Helps you convert raw mass spec data into tensors!☆10Nov 22, 2024Updated last year
- ☆13Jan 16, 2025Updated last year
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- A Python interface to proteomics data repositories☆40Jun 19, 2025Updated last year
- A list of tools on proteomics using deep learning☆111May 14, 2026Updated 5 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆89Oct 9, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Platform independent command line tool for analysis of mass spectrometry data.☆15Dec 26, 2022Updated 3 years ago
- Fast analysis of DIA proteomics experiments☆22Updated this week
- GlyCombo, a combinatorial glycan composition assignment tool☆13May 4, 2026Updated 6 months ago
- A programmable and modular LC/MS simulator in Python☆25Jul 3, 2026Updated 4 months ago
- Mass spectrometry data visualization☆39Nov 30, 2020Updated 5 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆206Updated this week
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Updated this week