taxonomicallyinformedannotation / timaLinks
https://taxonomicallyinformedannotation.github.io/tima
☆12Updated last month
Alternatives and similar repositories for tima
Users that are interested in tima are comparing it to the libraries listed below
Sorting:
- Ms2 basEd saMple vectOrization (memo) package☆17Updated 2 years ago
- ☆27Updated 3 weeks ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆56Updated last month
- ☆23Updated 10 months ago
- Spectral entropy for mass spectrometry data.☆34Updated last month
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Updated last month
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆71Updated last week
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆59Updated last month
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆137Updated 3 months ago
- ☆16Updated 3 years ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆20Updated 5 months ago
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)☆30Updated 9 months ago
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆246Updated last week
- A programmable and modular LC/MS simulator in Python☆24Updated this week
- 🤖 MetaboT 🍵 is an AI system that accelerates mass spectrometry-based metabolomics data mining.☆25Updated 5 months ago
- ☆20Updated last week
- Website code for COCONUT☆35Updated 2 years ago
- Search spectral library with entropy similarity☆21Updated 9 months ago
- Synthetic mzML writer☆13Updated 11 months ago
- ☆22Updated 4 months ago
- libChEBIpy: a Python API for accessing the ChEBI database☆25Updated 5 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Updated last year
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆19Updated last year
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆20Updated last year
- TidyMS: Tools for working with MS data in untargeted metabolomics☆60Updated last year
- sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java☆55Updated last year
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆40Updated last month
- HUPO-PSI mass spectrometry CV☆40Updated last week
- ☆15Updated this week
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19Updated 2 years ago