Alternatives and similar repositories for vimms

Users that are interested in vimms are comparing it to the libraries listed below

• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆56Updated last month
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 11 months ago
• gtluu / timsconvert
  ☆45Updated 10 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆52Updated last week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆67Updated last month
• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly
  ☆40Updated last month
• bittremieuxlab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆163Updated last month
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆101Updated this week
• michaelmarty / MassSpecCodingClub
  A community dedicated to education of computer coding applied to mass spectrometry applications.
  ☆52Updated 6 months ago
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆60Updated last year
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆150Updated this week
• bittremieuxlab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆33Updated last month
• HUPO-PSI / psi-ms-CV
  HUPO-PSI mass spectrometry CV
  ☆40Updated last week
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆32Updated last week
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆50Updated this week
• mafreitas / tdf2mzml
  ☆30Updated 2 years ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆54Updated 3 months ago
• LeidelLab / SMITER
  Synthetic mzML writer
  ☆13Updated 10 months ago
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆58Updated last week
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆44Updated 7 months ago
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆64Updated 2 years ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆48Updated 2 weeks ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated last week
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 4 years ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 7 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆56Updated 3 months ago
• mandelbrot-project / memo
  Ms2 basEd saMple vectOrization (memo) package
  ☆17Updated 2 years ago
• mobiusklein / ms_deisotope
  A library for deisotoping and charge state deconvolution of complex mass spectra
  ☆41Updated 6 months ago
• matchms / matchms
  Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
  ☆246Updated last week
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month