Alternatives and similar repositories for vimms

Users that are interested in vimms are comparing it to the libraries listed below

• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆55Updated 2 weeks ago
• gtluu / timsconvert
  ☆44Updated 9 months ago
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆59Updated last year
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆32Updated 5 months ago
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆64Updated last year
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆51Updated 3 weeks ago
• sirius-ms / sirius
  SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…
  ☆130Updated last month
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆98Updated 3 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated this week
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆56Updated 3 weeks ago
• bittremieuxlab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆33Updated 2 months ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆53Updated last month
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆50Updated last week
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated 2 months ago
• LeidelLab / SMITER
  Synthetic mzML writer
  ☆13Updated 9 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 10 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆86Updated last week
• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly
  ☆38Updated last week
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆30Updated last month
• bittremieuxlab / spectrum_utils
  Python package for efficient mass spectrometry data processing and visualization
  ☆161Updated last week
• mafreitas / tdf2mzml
  ☆30Updated 2 years ago
• michaelmarty / MassSpecCodingClub
  A community dedicated to education of computer coding applied to mass spectrometry applications.
  ☆52Updated 5 months ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆20Updated this week
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated this week
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated this week
• thermofisherlsms / RawFileReader
  ☆65Updated 9 months ago
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆42Updated 6 months ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆92Updated 3 weeks ago
• mandelbrot-project / memo
  Ms2 basEd saMple vectOrization (memo) package
  ☆17Updated 2 years ago
• matchms / matchms
  Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
  ☆242Updated last week