ajwilk / 2020_Wilk_COVIDLinks
Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"
☆49Updated 3 years ago
Alternatives and similar repositories for 2020_Wilk_COVID
Users that are interested in 2020_Wilk_COVID are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 2 years ago
- ☆63Updated 4 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- ☆39Updated 4 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- ☆40Updated 6 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ☆68Updated last year
- ☆47Updated 6 months ago
- Code repository for single cell RNA-seq☆36Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 7 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆75Updated last month
- ☆47Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- ☆32Updated 3 years ago
- ☆49Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Using TCR and expression for sequence embedding☆57Updated 6 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆56Updated last year
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago