ajwilk / 2020_Wilk_COVIDLinks
Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"
☆49Updated 4 years ago
Alternatives and similar repositories for 2020_Wilk_COVID
Users that are interested in 2020_Wilk_COVID are comparing it to the libraries listed below
Sorting:
- Repository for Cibersortx☆62Updated 4 years ago
- ☆48Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- ☆63Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- ☆32Updated 4 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆96Updated 8 months ago
- Unified access to several second-generation deconvolution methods☆89Updated 3 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- ☆62Updated 2 years ago
- ☆39Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 11 months ago
- ☆42Updated 7 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- ☆34Updated 6 years ago
- ☆30Updated 7 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- A portable and fast single cell type identifier☆63Updated 4 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- ☆63Updated 5 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Updated 3 years ago
- ☆47Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago