Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
☆21Jun 22, 2023Updated 3 years ago
Alternatives and similar repositories for bwa
Users that are interested in bwa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 7 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 7 months ago
- ☆17May 23, 2026Updated 4 months ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆22Aug 2, 2023Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- BWA-MEME: Faster BWA-MEM2 using learned-index☆138Jun 3, 2026Updated 4 months ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 6 years ago
- Web-tool for calculating and visualizing hydrophobic protrusions☆11Feb 22, 2022Updated 4 years ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- Fast alignment tool based on bwa-mem☆29Feb 22, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- A Benchmark Toolkit for Assembly Instructions Using the LLVM JIT☆18Oct 26, 2020Updated 5 years ago
- DEPRECATED. This Scalapck repository is deprecated. The last version in this repository is 3.0. Refer to "aocl-scalapack" repository unde…☆10Mar 15, 2021Updated 5 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆25Jun 20, 2022Updated 4 years ago
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆34May 11, 2020Updated 6 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 7 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Test of parallel compression acceleration☆17Sep 8, 2024Updated 2 years ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- General Purpose Timing Library☆35Mar 13, 2026Updated 6 months ago
- HCC Sample Applications☆13Jan 3, 2017Updated 9 years ago
- Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improv…☆14Dec 2, 2024Updated last year
- ☆15May 24, 2022Updated 4 years ago
- Presentation materials for the 2016 Berkeley C++ Summit☆14Oct 20, 2016Updated 9 years ago
- Mircosoft ToDo sync notion☆13Apr 17, 2022Updated 4 years ago
- Free literature retrieval system for DNA analysis☆13Nov 19, 2025Updated 10 months ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Hardware Acceleration of Banded Smith-Waterman Algorithm on an FPGA using Systolic array based architecture.☆12Nov 26, 2022Updated 3 years ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- Unsupervised fingerprinting of disordered solids leading to analogical materials discovery.☆11Feb 14, 2023Updated 3 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- K-mer substring space decomposition☆44May 27, 2026Updated 4 months ago
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago