minhhpham / bwaLinks
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
☆18Updated 2 years ago
Alternatives and similar repositories for bwa
Users that are interested in bwa are comparing it to the libraries listed below
Sorting:
- ☆50Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 6 months ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆130Updated last year
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆69Updated last year
- ☆125Updated 2 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Updated 3 months ago
- Predictive kmer models for development use☆62Updated 2 years ago
- Variant calling tool for long-read sequencing data☆117Updated 8 months ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆43Updated 3 months ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Updated 2 years ago
- Assembled Genomes Compressor☆171Updated last year
- ☆11Updated 5 years ago
- Aligns short reads using dynamic seed size with strobemers☆185Updated this week
- WFA-lib: Wavefront alignment algorithm library v2☆199Updated 6 months ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆125Updated last year
- ☆25Updated 4 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆59Updated 3 months ago
- Global alignment and alignment extension☆139Updated 2 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆73Updated 2 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆112Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆159Updated last month
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆82Updated 3 years ago
- Deep learning framework for SV calling and genotyping☆111Updated 2 years ago
- MeShClust: an intelligent tool for clustering DNA sequences☆39Updated 3 years ago
- The Platinum Genomes Truthset☆89Updated 8 years ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆100Updated last week