Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
☆21Jun 22, 2023Updated 3 years ago
Alternatives and similar repositories for bwa
Users that are interested in bwa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆18Dec 16, 2022Updated 3 years ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 7 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 6 months ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17May 23, 2026Updated 3 months ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- ☆53Jul 27, 2022Updated 4 years ago
- ☆22Aug 2, 2023Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- BWA-MEME: Faster BWA-MEM2 using learned-index☆138Jun 3, 2026Updated 3 months ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 6 years ago
- 基于One API的二次开发版本,仅供个人管理渠道使用,请勿用于商业API分发!☆15Mar 7, 2024Updated 2 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆25Jun 20, 2022Updated 4 years ago
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆34May 11, 2020Updated 6 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 7 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Test of parallel compression acceleration☆17Sep 8, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- Mircosoft ToDo sync notion☆13Apr 17, 2022Updated 4 years ago
- Free literature retrieval system for DNA analysis☆13Nov 19, 2025Updated 9 months ago
- ☆15Apr 11, 2024Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- ☆14Apr 6, 2025Updated last year
- Ollama zsh completetion based on https://gist.githubusercontent.com/obeone/9313811fd61a7cbb843e0001a4434c58/raw/_ollama.zsh☆35Aug 24, 2026Updated 2 weeks ago
- Paper list for accleration of transformers☆14Jul 1, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Hardware Acceleration of Banded Smith-Waterman Algorithm on an FPGA using Systolic array based architecture.☆12Nov 26, 2022Updated 3 years ago
- Unsupervised fingerprinting of disordered solids leading to analogical materials discovery.☆10Feb 14, 2023Updated 3 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago
- Go port of wyhash v3☆14Nov 1, 2022Updated 3 years ago
- JPEG image codec that uses SIMD instructions (MMX, SSE2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86,…☆10Apr 15, 2026Updated 4 months ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago