Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
☆21Jun 22, 2023Updated 3 years ago
Alternatives and similar repositories for bwa
Users that are interested in bwa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆19Dec 16, 2022Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- ☆16May 23, 2026Updated 2 months ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- ☆53Jul 27, 2022Updated 4 years ago
- ☆22Aug 2, 2023Updated 2 years ago
- Blazingly fast, streaming duplicate detection for NGS data☆17Updated this week
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- BWA-MEME: Faster BWA-MEM2 using learned-index☆139Jun 3, 2026Updated last month
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 9 months ago
- ☆24Jan 25, 2024Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 基于One API的二次开发版本,仅供个人管理渠道使用,请勿用于商业API分发!☆15Mar 7, 2024Updated 2 years ago
- Genevieve genome report tool☆14Dec 8, 2022Updated 3 years ago
- Fast alignment tool based on bwa-mem☆26Feb 22, 2026Updated 5 months ago
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆25Jun 20, 2022Updated 4 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 5 months ago
- A metagenome assembler for the linked-reads with high-barcode specificity☆10Feb 27, 2026Updated 5 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- CloudStack Container Service Plugin. Repo: http://packages.shapeblue.com/ccs☆17Mar 31, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- General Purpose Timing Library☆34Mar 13, 2026Updated 4 months ago
- ☆15May 24, 2022Updated 4 years ago
- Feed-forward neural network implementation in C with SIMD instructions☆18May 25, 2025Updated last year
- My personal website☆12Jul 16, 2021Updated 5 years ago
- Mircosoft ToDo sync notion☆13Apr 17, 2022Updated 4 years ago
- Free literature retrieval system for DNA analysis☆13Nov 19, 2025Updated 8 months ago
- ☆15Apr 11, 2024Updated 2 years ago
- Docker image for orchestrating backup of data and mysql containers, using duplicity at its core.☆24Aug 23, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- Open Shop Scheduling Problem resolution via Ant Colony Optimization algorithm.☆14Mar 28, 2023Updated 3 years ago
- Ollama zsh completetion based on https://gist.githubusercontent.com/obeone/9313811fd61a7cbb843e0001a4434c58/raw/_ollama.zsh☆33Feb 11, 2026Updated 5 months ago
- Paper list for accleration of transformers☆14Jul 1, 2023Updated 3 years ago
- Hardware Acceleration of Banded Smith-Waterman Algorithm on an FPGA using Systolic array based architecture.☆12Nov 26, 2022Updated 3 years ago
- Unsupervised fingerprinting of disordered solids leading to analogical materials discovery.☆10Feb 14, 2023Updated 3 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year