minhhpham / bwaView external linksLinks
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
☆19Jun 22, 2023Updated 2 years ago
Alternatives and similar repositories for bwa
Users that are interested in bwa are comparing it to the libraries listed below
Sorting:
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆19Dec 16, 2022Updated 3 years ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated last year
- An Fast variant calling tool to detection germline and somatic variants☆11Jan 31, 2026Updated 2 weeks ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago
- ☆21Aug 2, 2023Updated 2 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- ☆52Jul 27, 2022Updated 3 years ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 8 months ago
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆33May 11, 2020Updated 5 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆133Jul 1, 2024Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆40Apr 30, 2025Updated 9 months ago
- General Purpose Timing Library☆34Aug 17, 2025Updated 5 months ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated last week
- The 10,000 most used Dutch words☆11Dec 16, 2022Updated 3 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated 8 months ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- ☆10Dec 17, 2025Updated last month
- Some example code☆12Jul 23, 2024Updated last year
- tools for assessing the accuracy of genome assemblies☆35Apr 16, 2024Updated last year
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆45Dec 10, 2025Updated 2 months ago
- 📐 Results for the Ranking Metrics submission @ GLB 2022☆10Apr 6, 2022Updated 3 years ago
- JPEG image codec that uses SIMD instructions (MMX, SSE2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86,…☆10Jun 21, 2017Updated 8 years ago
- Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improv…☆13Dec 2, 2024Updated last year
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Feb 13, 2023Updated 3 years ago
- ☆11Dec 29, 2020Updated 5 years ago
- A curated list of awesome Molecular Modeling And Drug Discovery 🔥☆11Jul 21, 2022Updated 3 years ago
- Genevieve genome report tool☆14Dec 8, 2022Updated 3 years ago
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 2 months ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Oct 29, 2021Updated 4 years ago
- Halcyon Days is a modern and stylish HTML5/CSS3 template with a pixel-perfect design and smooth effects. It’s especially fitting for a po…☆10Feb 24, 2021Updated 4 years ago
- Data repository for pkasolver☆12Mar 28, 2022Updated 3 years ago
- Using MolE pre-trained representation to predict novel antimicrobial compounds☆11Aug 28, 2025Updated 5 months ago
- A hand tracking demo made with mediapipe where you can control lights with pinching your fingers and moving your hand up/down.☆16Apr 20, 2023Updated 2 years ago
- Unsupervised fingerprinting of disordered solids leading to analogical materials discovery.☆10Feb 14, 2023Updated 3 years ago
- Go port of wyhash v3☆14Nov 1, 2022Updated 3 years ago
- ☆10Aug 29, 2012Updated 13 years ago