Alternatives and similar repositories for DL4VC

Users that are interested in DL4VC are comparing it to the libraries listed below

• NVIDIA / VariantWorks
  Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
  ☆48Updated 3 months ago
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆98Updated 3 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 6 months ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• lh3 / CHM-eval
  ☆55Updated 5 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆40Updated 10 years ago
• broadinstitute / oncotator
  ☆69Updated 3 years ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• Illumina / PlatinumGenomes
  The Platinum Genomes Truthset
  ☆89Updated 8 years ago
• relipmoc / skewer
  ☆96Updated 3 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆63Updated 3 years ago
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆65Updated last month
• PGDX / cerebro-paper
  ☆23Updated 7 years ago
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆95Updated 6 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆57Updated 5 years ago
• walaj / SeqLib
  C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  ☆138Updated 2 months ago
• ncbi / dbvar
  dbVar
  ☆40Updated 3 years ago
• statgen / bamUtil
  ☆91Updated 3 years ago
• humanlongevity / HLA
  xHLA: Fast and accurate HLA typing from short read sequence data
  ☆113Updated 2 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 5 years ago
• GenomiqueENS / dockerfiles
  ☆83Updated 3 years ago
• gatk-workflows / broad-prod-wgs-germline-snps-indels
  Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…
  ☆56Updated 5 years ago
• sanjanalab / GUIDES
  A new workflow for the custom design of CRISPR libraries.
  ☆21Updated 3 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• Illumina / Polaris
  Data and information about the Polaris study
  ☆54Updated 6 years ago
• griffithlab / pVAC-Seq
  DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
  ☆61Updated 6 years ago