☆26Dec 29, 2020Updated 5 years ago
Alternatives and similar repositories for fast-bonito
Users that are interested in fast-bonito are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Apr 8, 2021Updated 5 years ago
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆112May 10, 2024Updated 2 years ago
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆21Jan 21, 2026Updated 4 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆431Feb 20, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 7 months ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆110Apr 1, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Quality control on genetic variants from next-generation sequencing data using random forest☆20May 26, 2022Updated 4 years ago
- ☆29Oct 17, 2023Updated 2 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- ☆32Aug 2, 2022Updated 3 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆41Apr 30, 2025Updated last year
- Minotour API, web and client code☆30Mar 28, 2026Updated last month
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- ☆12May 6, 2021Updated 5 years ago
- ☆30Dec 22, 2023Updated 2 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- ☆12Jun 23, 2025Updated 11 months ago