EIHealth-Lab / fast-bonitoLinks
☆26Updated 5 years ago
Alternatives and similar repositories for fast-bonito
Users that are interested in fast-bonito are comparing it to the libraries listed below
Sorting:
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆69Updated last year
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- ☆49Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Nanopore basecalling and consensus decoding☆46Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆48Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- Python client library for Guppy☆32Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- Master of Pores 2☆23Updated last year
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Updated 3 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆18Updated 6 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago