EIHealth-Lab / fast-bonito
☆25Updated 4 years ago
Alternatives and similar repositories for fast-bonito:
Users that are interested in fast-bonito are comparing it to the libraries listed below
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- ☆46Updated 2 months ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 2 years ago
- Find Unique genomic Regions☆29Updated last week
- Master of Pores 2☆23Updated last month
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- Very fast ONT basecaller☆52Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated last year
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- ☆28Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 months ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 6 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated last month
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated 8 months ago
- ☆28Updated last month
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Updated 3 years ago
- ☆12Updated 6 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆53Updated 8 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated last month
- ☆31Updated 8 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆23Updated 7 months ago
- ☆20Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆34Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago