EIHealth-Lab / fast-bonito
☆25Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for fast-bonito
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- Remove lambda phage reads from a fastq file☆28Updated last year
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated 6 months ago
- ☆46Updated 2 weeks ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- Master of Pores 2☆23Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last month
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆43Updated 2 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆36Updated 3 months ago
- A tutorial on structural variant calling for short read sequencing data☆26Updated last month
- 🍶 Genome assembly with short sequence reads☆25Updated 10 months ago
- Minor Variant Calling and Phasing Tools☆15Updated 2 years ago
- new repo☆27Updated 3 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- An insertion caller for Illumina paired-end WGS data.☆22Updated 3 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year