☆27Dec 29, 2020Updated 5 years ago
Alternatives and similar repositories for fast-bonito
Users that are interested in fast-bonito are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆112May 10, 2024Updated 2 years ago
- ☆12Apr 8, 2021Updated 5 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 5 months ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 4 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 9 months ago
- ☆13Jun 3, 2026Updated last month
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- A nextflow pipeline for calling modifications in nanopore reads.☆16Jul 7, 2026Updated 2 weeks ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- PEPPER-Margin-DeepVariant☆259Jan 12, 2024Updated 2 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆111Jun 15, 2026Updated last month
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆24Jan 21, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 3 weeks ago
- Quality control on genetic variants from next-generation sequencing data using random forest☆20May 26, 2022Updated 4 years ago
- ☆29Oct 17, 2023Updated 2 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- ☆32Aug 2, 2022Updated 3 years ago
- Fast alignment tool based on bwa-mem☆26Feb 22, 2026Updated 5 months ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- ☆13May 30, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Minotour API, web and client code☆30Mar 28, 2026Updated 3 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- ☆30Dec 22, 2023Updated 2 years ago
- ☆12May 6, 2021Updated 5 years ago