nahmedraja / GASAL2Links
☆49Updated 3 years ago
Alternatives and similar repositories for GASAL2
Users that are interested in GASAL2 are comparing it to the libraries listed below
Sorting:
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 4 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆17Updated 2 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 3 months ago
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆74Updated last year
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆39Updated 3 weeks ago
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆124Updated this week
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.☆65Updated 2 years ago
- Global alignment and alignment extension☆134Updated 2 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆190Updated 3 months ago
- ☆25Updated 4 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆57Updated last week
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆51Updated 3 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 9 months ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Accelerated kernel library for genomics☆108Updated last month
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆46Updated last week
- A fast and memory-efficient k-mer counter with GPU-support☆37Updated 4 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated 10 months ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆39Updated last year
- slow5lib is a software library for reading & writing SLOW5 files.☆47Updated last month
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆71Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- ClairS - a deep-learning method for long-read somatic small variant calling☆88Updated last month
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆77Updated last year
- BWA-MEME: Faster BWA-MEM2 using learned-index☆125Updated last year
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆100Updated last week
- Python bindings for the parasail C library.☆106Updated 11 months ago
- A pairwise sequence aligner written in Rust☆136Updated last month