nahmedraja / GASAL2

Related projects ⓘ

Alternatives and complementary repositories for GASAL2

• quim0 / WFA-GPU
  GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
  ☆28Updated last month
• NVIDIA / VariantWorks
  Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
  ☆44Updated 2 years ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆127Updated last year
• gsneha26 / SegAlign
  A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
  ☆66Updated 3 months ago
• minhhpham / bwa
  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
  ☆15Updated last year
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• EIHealth-Lab / fast-bonito
  ☆25Updated 3 years ago
• nanoporetech / bwapy
  Python bindings to bwa mem
  ☆31Updated 4 years ago
• NVIDIA-Genomics-Research / DL4VC
  ☆12Updated 4 years ago
• fmfi-compbio / deepnano-blitz
  Very fast ONT basecaller
  ☆52Updated 2 years ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆63Updated 6 years ago
• human-pangenomics / HPP_Year1_Assemblies
  Assemblies from HPP Year 1 production
  ☆66Updated last year
• CMU-SAFARI / RawHash
  RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…
  ☆50Updated 3 weeks ago
• Minimap2onGPU / mm2-gb
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆18Updated last month
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated 11 months ago
• ruanjue / wtdbg
  A fuzzy Bruijn graph approach to long noisy reads assembly
  ☆39Updated 7 years ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆53Updated last year
• GATB / gatb-core
  Core library of the Genome Analysis Toolbox with de-Bruijn graph
  ☆63Updated last month
• ljdursi / poapy
  A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
  ☆71Updated 5 months ago
• skovaka / uncalled4
  ☆43Updated last month
• human-pangenomics / hpp_pangenome_resources
  ☆100Updated last year
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆21Updated 2 months ago
• sfu-compbio / mrsfast
  mrsFAST: micro-read substitution-only Fast Alignment Search Tool
  ☆28Updated 4 years ago
• cschin / Peregrine
  Peregrine: Fast Genome Assembler Using SHIMMER Index
  ☆101Updated 2 years ago
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆75Updated last week
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆154Updated 8 months ago
• will-rowe / genome-sketching
  online notebooks for a review of genome sketching
  ☆60Updated 5 years ago
• kaist-ina / BWA-MEME
  BWA-MEME: Faster BWA-MEM2 using learned-index
  ☆111Updated 4 months ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆86Updated 2 years ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆69Updated last year