CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search
☆46Dec 10, 2025Updated 4 months ago
Alternatives and similar repositories for CUDASW4
Users that are interested in CUDASW4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆13Nov 6, 2025Updated 5 months ago
- genome sequence alignment☆14Oct 9, 2019Updated 6 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆63Jan 22, 2026Updated 2 months ago
- Simple Tax Reporting Tool for share transactions on foreign exchanges☆23Apr 2, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Dec 9, 2024Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 2 months ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated last month
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated last year
- A fast and memory-efficient k-mer counter with GPU-support☆38Oct 26, 2020Updated 5 years ago
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆226Apr 23, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆41Apr 30, 2025Updated 11 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆211Mar 18, 2026Updated 3 weeks ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- ☆20Jan 23, 2019Updated 7 years ago
- General Purpose Timing Library☆34Mar 13, 2026Updated 3 weeks ago
- ☆15Dec 8, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- Score-based 3D molecule generation with neural fields - NeurIPS 2024☆28Dec 3, 2024Updated last year
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆19Dec 16, 2022Updated 3 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22May 8, 2024Updated last year
- Efficient, parallel compression for terabyte-scale data☆61Feb 25, 2026Updated last month
- ☆21Aug 2, 2023Updated 2 years ago
- A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein languag…☆18Jan 27, 2026Updated 2 months ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 6 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆71Aug 7, 2024Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 4 years ago
- ☆10Apr 20, 2018Updated 7 years ago
- Codon's bioinformatics module☆58Aug 6, 2025Updated 8 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆19Jun 22, 2023Updated 2 years ago
- Accelerated kernel library for genomics☆111Jul 7, 2025Updated 9 months ago
- ☆27May 15, 2024Updated last year