CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search
☆46Dec 10, 2025Updated 8 months ago
Alternatives and similar repositories for CUDASW4
Users that are interested in CUDASW4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆34May 11, 2020Updated 6 years ago
- ☆21Jul 2, 2026Updated last month
- genome sequence alignment☆14Oct 9, 2019Updated 6 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆64Jan 22, 2026Updated 6 months ago
- ☆21Aug 21, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A fast, AVX2 and ARM Neon accelerated FM index library☆35Dec 9, 2024Updated last year
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 6 months ago
- Simple Tax Reporting Tool for share transactions on foreign exchanges☆27Apr 2, 2026Updated 4 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 5 months ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- Fast array utilities☆15Updated this week
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆229Apr 23, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A fast and memory-efficient k-mer counter with GPU-support☆41Oct 26, 2020Updated 5 years ago
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆225Updated this week
- General Purpose Timing Library☆35Mar 13, 2026Updated 4 months ago
- ☆20Jan 23, 2019Updated 7 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 10 months ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Jul 12, 2022Updated 4 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python Client Library for the G2P Portal API☆15May 20, 2026Updated 2 months ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- Score-based 3D molecule generation with neural fields - NeurIPS 2024☆27Dec 3, 2024Updated last year
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22May 8, 2024Updated 2 years ago
- ☆22Aug 2, 2023Updated 3 years ago
- This Repo Contains Script To Fine Tune Open Source Models Using Unsloth by using UI with simple click and progress☆12Oct 3, 2024Updated last year
- Portable database of microhaplotype marker and allele frequency data☆13Oct 2, 2025Updated 10 months ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆72Aug 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 3 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- Automatically annotate cell types, consistently across samples.☆27Aug 3, 2026Updated last week
- neuropeptide prediction☆15Sep 2, 2022Updated 3 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆21Jun 22, 2023Updated 3 years ago
- Accelerated kernel library for genomics☆112Jul 7, 2025Updated last year