Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
☆48Aug 20, 2025Updated 6 months ago
Alternatives and similar repositories for VariantWorks
Users that are interested in VariantWorks are comparing it to the libraries listed below
Sorting:
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- SDK for GPU accelerated genome assembly and analysis☆300May 3, 2024Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 8 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last week
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 3 years ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆256Mar 11, 2025Updated 11 months ago
- Yet another k-mer analyzer☆160Dec 30, 2025Updated 2 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- ☆16Nov 3, 2025Updated 3 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated last year
- Global alignment and alignment extension☆142Jun 27, 2023Updated 2 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Coding Genome Reconstruction using Iso-Seq data☆61Oct 20, 2021Updated 4 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 weeks ago
- Detect novel (and reference) STR expansions from short-read data☆70Dec 6, 2025Updated 2 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago