NVIDIA / VariantWorksLinks
Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
☆45Updated 2 years ago
Alternatives and similar repositories for VariantWorks
Users that are interested in VariantWorks are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- ☆49Updated 7 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆26Updated 4 months ago
- ☆31Updated 2 years ago
- TIDDIT - structural variant calling☆73Updated 2 months ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆44Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Master of Pores 2☆23Updated 6 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆52Updated 4 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Digenome-toolkit ver2.☆16Updated 3 years ago
- new repo☆28Updated 4 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- GEM-Mapper v3☆58Updated 3 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- Sentieon DNAscope + Machine Learning Model☆12Updated 3 months ago
- mtDNA Variant Caller☆34Updated 6 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 4 months ago