ryanjw / co-occurrenceLinks
R scripts for performing co-occurrence analyses
☆34Updated 10 years ago
Alternatives and similar repositories for co-occurrence
Users that are interested in co-occurrence are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- Statistics and visualization for amplicon data☆71Updated 2 years ago
- ☆76Updated last year
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- dada2 formatted nifH database☆12Updated last year
- Transform files to the microtable object with microeco package☆27Updated 2 weeks ago
- ☆23Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- SourceTracker2☆80Updated last year
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆49Updated 3 years ago
- ☆12Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆68Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 5 years ago
- R and python scripts for correlation-based network analysis☆61Updated 5 years ago
- ☆20Updated 5 years ago
- ☆14Updated 10 years ago
- ☆41Updated 7 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 5 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- ☆49Updated 4 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago