R scripts for performing co-occurrence analyses
☆36Jan 7, 2015Updated 11 years ago
Alternatives and similar repositories for co-occurrence
Users that are interested in co-occurrence are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jun 1, 2021Updated 4 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆27Apr 22, 2020Updated 6 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Nov 13, 2019Updated 6 years ago
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 3 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Mar 16, 2026Updated last month
- ☆23Mar 2, 2019Updated 7 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24May 3, 2019Updated 7 years ago
- ☆52Mar 29, 2026Updated last month
- A package for the analysis of how drivers affect multiple functions in a system.☆17May 23, 2022Updated 3 years ago
- ☆59Dec 30, 2020Updated 5 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- ☆21Apr 25, 2025Updated last year
- Deblur is a greedy deconvolution algorithm based on known read error profiles.☆99Mar 8, 2025Updated last year
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆52Dec 9, 2021Updated 4 years ago
- Scripts for stat and plot figures in rice microbiome paper☆20May 12, 2019Updated 6 years ago
- An R pakage to calculate diversity through Hill Numbers☆36Nov 11, 2025Updated 5 months ago
- ☆16Mar 16, 2020Updated 6 years ago
- This is an R package for element cycle analysis using metagenomic data.☆44Feb 2, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆18Jul 9, 2024Updated last year
- creating hybrid-gene phylogenetic trees for diversity analyses☆30Aug 23, 2022Updated 3 years ago
- SourceTracker2☆86Jul 10, 2024Updated last year
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- ☆125Oct 12, 2021Updated 4 years ago
- ☆11Apr 11, 2017Updated 9 years ago
- ☆16Jun 9, 2025Updated 10 months ago
- ☆15Nov 7, 2014Updated 11 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 5 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated 11 months ago
- ggplot-based plots for vegan☆121Updated this week
- FUNGuild: parsing OTUs into functional guilds☆130Apr 26, 2024Updated 2 years ago
- ☆14Jun 24, 2019Updated 6 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Apr 14, 2020Updated 6 years ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago